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Set2 histone methyltransferase regulates transcription coupled-nucleotide excision repair in yeast

PLoS genetics, 2022-03, Vol.18 (3), p.e1010085-e1010085

2022

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Chromosomal landscape of UV damage formation and repair at single-nucleotide resolution

Proceedings of the National Academy of Sciences - PNAS, 2016-08, Vol.113 (32), p.9057-9062

2016

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ETS transcription factors induce a unique UV damage signature that drives recurrent mutagenesis in melanoma

Nature communications, 2018-07, Vol.9 (1), p.2626-13, Article 2626

2018

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DNA Repair in Nucleosomes: Insights from Histone Modifications and Mutants

International journal of molecular sciences, 2024-04, Vol.25 (8), p.4393

2024

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Detecting recurrent passenger mutations in melanoma by targeted UV damage sequencing

Nature communications, 2023-05, Vol.14 (1), p.2702-2702, Article 2702

2023

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Elf1 promotes transcription-coupled repair in yeast by using its C-terminal domain to bind TFIIH

Nature communications, 2024-07, Vol.15 (1), p.6223-12, Article 6223

2024

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Nucleosome positions establish an extended mutation signature in melanoma

PLoS genetics, 2018-11, Vol.14 (11), p.e1007823-e1007823

2018

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R-loop formation by dCas9 is mutagenic in Saccharomyces cerevisiae

Nucleic acids research, 2019-03, Vol.47 (5), p.2389-2401

2019

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Damage mapping techniques and the light they have shed on canonical and atypical UV photoproducts

Frontiers in genetics, 2023-01, Vol.13, p.1102593-1102593

2023

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Single-Molecule Imaging Reveals that Rad4 Employs a Dynamic DNA Damage Recognition Process

Molecular cell, 2016-10, Vol.64 (2), p.376-387

2016

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A cassette of basic amino acids in histone H2B regulates nucleosome dynamics and access to DNA damage

The Journal of biological chemistry, 2018-05, Vol.293 (19), p.7376-7386

2018

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Residues in the Nucleosome Acidic Patch Regulate Histone Occupancy and Are Important for FACT Binding in Saccharomyces cerevisiae

Genetics (Austin), 2017-07, Vol.206 (3), p.1339-1348

2017

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Contributions of replicative and translesion DNA polymerases to mutagenic bypass of canonical and atypical UV photoproducts

Nature communications, 2023-05, Vol.14 (1), p.2576-2576, Article 2576

2023

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Nucleosomes Selectively Inhibit Cas9 Off-target Activity at a Site Located at the Nucleosome Edge

The Journal of biological chemistry, 2016-11, Vol.291 (48), p.24851-24856

2016

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Mutperiod: Analysis of periodic mutation rates in nucleosomes

Computational and structural biotechnology journal, 2021-01, Vol.19, p.4177-4183

2021

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High-resolution mapping demonstrates inhibition of DNA excision repair by transcription factors

eLife, 2022-03, Vol.11

2022

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Tips, Tricks, and Potential Pitfalls of CRISPR Genome Editing in Saccharomyces cerevisiae

Frontiers in bioengineering and biotechnology, 2022-05, Vol.10, p.924914-924914

2022

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Athena: a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences

Bioinformatics, 2005-12, Vol.21 (24), p.4411-4413

2005

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Genome-Wide Location and Function of DNA Binding Proteins

Science (American Association for the Advancement of Science), 2000-12, Vol.290 (5500), p.2306-2309

2000

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Atypical UV Photoproducts Induce Non-canonical Mutation Classes Associated with Driver Mutations in Melanoma

Cell reports (Cambridge), 2020-11, Vol.33 (7), p.108401-108401, Article 108401

2020

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Molecular mechanism of UV damage modulation in nucleosomes

Computational and structural biotechnology journal, 2022-01, Vol.20, p.5393-5400

2022

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The Surprising Diversity of UV‐Induced Mutations

Genetics & genomics next, 2024-06, Vol.5 (2), p.2300205-n/a

2024

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Organization of DNA damage, excision repair, and mutagenesis in chromatin: A genomic perspective

DNA repair, 2019-09, Vol.81, p.102645-102645, Article 102645

2019

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Genome-wide role of Rad26 in promoting transcription-coupled nucleotide excision repair in yeast chromatin

Proceedings of the National Academy of Sciences - PNAS, 2020-08, Vol.117 (31), p.18608-18616

2020

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Set2 histone methyltransferase regulates transcription coupled-nucleotide excision repair in yeast

Chromosomal landscape of UV damage formation and repair at single-nucleotide resolution

ETS transcription factors induce a unique UV damage signature that drives recurrent mutagenesis in melanoma

DNA Repair in Nucleosomes: Insights from Histone Modifications and Mutants

Detecting recurrent passenger mutations in melanoma by targeted UV damage sequencing

Elf1 promotes transcription-coupled repair in yeast by using its C-terminal domain to bind TFIIH

Nucleosome positions establish an extended mutation signature in melanoma

R-loop formation by dCas9 is mutagenic in Saccharomyces cerevisiae

Damage mapping techniques and the light they have shed on canonical and atypical UV photoproducts

Elongation factor ELOF1 drives transcription-coupled repair and prevents genome instability

Single-Molecule Imaging Reveals that Rad4 Employs a Dynamic DNA Damage Recognition Process

A cassette of basic amino acids in histone H2B regulates nucleosome dynamics and access to DNA damage

Residues in the Nucleosome Acidic Patch Regulate Histone Occupancy and Are Important for FACT Binding in Saccharomyces cerevisiae

Contributions of replicative and translesion DNA polymerases to mutagenic bypass of canonical and atypical UV photoproducts

Nucleosomes Selectively Inhibit Cas9 Off-target Activity at a Site Located at the Nucleosome Edge

Mutperiod: Analysis of periodic mutation rates in nucleosomes

High-resolution mapping demonstrates inhibition of DNA excision repair by transcription factors

Tips, Tricks, and Potential Pitfalls of CRISPR Genome Editing in Saccharomyces cerevisiae

Athena: a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences

Genome-Wide Location and Function of DNA Binding Proteins

Atypical UV Photoproducts Induce Non-canonical Mutation Classes Associated with Driver Mutations in Melanoma

Molecular mechanism of UV damage modulation in nucleosomes

The Surprising Diversity of UV‐Induced Mutations

Organization of DNA damage, excision repair, and mutagenesis in chromatin: A genomic perspective

Genome-wide role of Rad26 in promoting transcription-coupled nucleotide excision repair in yeast chromatin

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