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Drug-induced liver injury severity and toxicity (DILIst): binary classification of 1279 drugs by human hepatotoxicity

Drug discovery today, 2020-01, Vol.25 (1), p.201-208

2020

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A network pharmacology study of Chinese medicine QiShenYiQi to reveal its underlying multi-compound, multi-target, multi-pathway mode of action

PloS one, 2014-05, Vol.9 (5), p.e95004

2014

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HetEnc: a deep learning predictive model for multi-type biological dataset

BMC genomics, 2019-08, Vol.20 (1), p.638-638, Article 638

2019

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Optimized imaging methods for species-level identification of food-contaminating beetles

Scientific reports, 2021-04, Vol.11 (1), p.7957-7957, Article 7957

2021

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Study of serious adverse drug reactions using FDA-approved drug labeling and MedDRA

BMC bioinformatics, 2019-03, Vol.20 (Suppl 2), p.97-97, Article 97

2019

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Long noncoding RNA LINC00844-mediated molecular network regulates expression of drug metabolizing enzymes and nuclear receptors in human liver cells

Archives of toxicology, 2020-05, Vol.94 (5), p.1637-1653

2020

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Transcriptome analysis reveals lung-specific miRNAs associated with impaired mucociliary clearance induced by cigarette smoke in an in vitro human airway tissue model

Archives of toxicology, 2021-05, Vol.95 (5), p.1763-1778

2021

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DLI-IT: a deep learning approach to drug label identification through image and text embedding

BMC medical informatics and decision making, 2020-04, Vol.20 (1), p.68-9, Article 68

2020

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BERT-Based Natural Language Processing of Drug Labeling Documents: A Case Study for Classifying Drug-Induced Liver Injury Risk

Frontiers in artificial intelligence, 2021-12, Vol.4, p.729834-729834

2021

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Relating Anatomical Therapeutic Indications by the Ensemble Similarity of Drug Sets

Journal of chemical information and modeling, 2013-08, Vol.53 (8), p.2154-2160

2013

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Identification of the effective constituents for anti-inflammatory activity of Ju-Zhi-Jiang-Tang, an ancient traditional Chinese medicine formula

Journal of Chromatography A, 2014-06, Vol.1348, p.105-124

2014

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Technical advance in targeted NGS analysis enables identification of lung cancer risk-associated low frequency TP53, PIK3CA, and BRAF mutations in airway epithelial cells

BMC cancer, 2019-11, Vol.19 (1), p.1081-1081, Article 1081

2019

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Comprehensive Assessments of RNA-seq by the SEQC Consortium: FDA-Led Efforts Advance Precision Medicine

Pharmaceutics, 2016-03, Vol.8 (1), p.8

2016

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Assessing the performance of large language models in literature screening for pharmacovigilance: a comparative study

Frontiers in Drug Safety and Regulation, 2024-06, Vol.4

2024

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Novel reference genes in colorectal cancer identify a distinct subset of high stage tumors and their associated histologically normal colonic tissues

BMC medical genetics, 2019-08, Vol.20 (1), p.138-138, Article 138

2019

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Determination of minimum training sample size for microarray-based cancer outcome prediction-an empirical assessment

PloS one, 2013-07, Vol.8 (7), p.e68579-e68579

2013

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Network-based Assessment on Chemical-induced Cholestatic Liver Injury

Current topics in medicinal chemistry, 2016-12, Vol.16 (30), p.3668

2016

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LTMap: a web server for assessing the potential liver toxicity by genome-wide transcriptional expression data

Journal of applied toxicology, 2014-07, Vol.34 (7), p.805-809

2014

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Enhanced QSAR model performance by integrating structural and gene expression information

Molecules (Basel, Switzerland), 2013-09, Vol.18 (9), p.10789-10801

2013

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Consensus Ranking Approach to Understanding the Underlying Mechanism With QSAR

Journal of chemical information and modeling, 2010-11, Vol.50 (11), p.1941-1948

2010

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Toxicogenomic analysis of the particle dose- and size-response relationship of silica particles-induced toxicity in mice

Nanotechnology, 2013-01, Vol.24 (1), p.015106-1-12

2013

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Accurate species identification of food-contaminating beetles with quality-improved elytral images and deep learning

Frontiers in artificial intelligence, 2022-08, Vol.5, p.952424-952424

2022

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Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine

Pharmaceutics, 2016-04, Vol.8 (2), p.15

2016

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Bioactivity Signatures of Drugs vs. Environmental Chemicals Revealed by Tox21 High-Throughput Screening Assays

Frontiers in big data, 2019-12, Vol.2, p.50

2019

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Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA

Cell reports methods, 2021-11, Vol.1 (7), p.100106-100106, Article 100106

2021

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Drug-induced liver injury severity and toxicity (DILIst): binary classification of 1279 drugs by human hepatotoxicity

A network pharmacology study of Chinese medicine QiShenYiQi to reveal its underlying multi-compound, multi-target, multi-pathway mode of action

HetEnc: a deep learning predictive model for multi-type biological dataset

Optimized imaging methods for species-level identification of food-contaminating beetles

Study of serious adverse drug reactions using FDA-approved drug labeling and MedDRA

Long noncoding RNA LINC00844-mediated molecular network regulates expression of drug metabolizing enzymes and nuclear receptors in human liver cells

Transcriptome analysis reveals lung-specific miRNAs associated with impaired mucociliary clearance induced by cigarette smoke in an in vitro human airway tissue model

DLI-IT: a deep learning approach to drug label identification through image and text embedding

BERT-Based Natural Language Processing of Drug Labeling Documents: A Case Study for Classifying Drug-Induced Liver Injury Risk

Relating Anatomical Therapeutic Indications by the Ensemble Similarity of Drug Sets

Identification of the effective constituents for anti-inflammatory activity of Ju-Zhi-Jiang-Tang, an ancient traditional Chinese medicine formula

Technical advance in targeted NGS analysis enables identification of lung cancer risk-associated low frequency TP53, PIK3CA, and BRAF mutations in airway epithelial cells

Comprehensive Assessments of RNA-seq by the SEQC Consortium: FDA-Led Efforts Advance Precision Medicine

Assessing the performance of large language models in literature screening for pharmacovigilance: a comparative study

Novel reference genes in colorectal cancer identify a distinct subset of high stage tumors and their associated histologically normal colonic tissues

Determination of minimum training sample size for microarray-based cancer outcome prediction-an empirical assessment

Network-based Assessment on Chemical-induced Cholestatic Liver Injury

LTMap: a web server for assessing the potential liver toxicity by genome-wide transcriptional expression data

Enhanced QSAR model performance by integrating structural and gene expression information

Consensus Ranking Approach to Understanding the Underlying Mechanism With QSAR

Toxicogenomic analysis of the particle dose- and size-response relationship of silica particles-induced toxicity in mice

Accurate species identification of food-contaminating beetles with quality-improved elytral images and deep learning

Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine

Bioactivity Signatures of Drugs vs. Environmental Chemicals Revealed by Tox21 High-Throughput Screening Assays

Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA

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