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Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs

Cell, 2020-10, Vol.183 (1), p.197-210.e32

2020

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The oncocytic subtype is genetically distinct from other pancreatic intraductal papillary mucinous neoplasm subtypes

Modern pathology, 2016-09, Vol.29 (9), p.1058-1069

2016

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Identification of tumor suppressors and oncogenes from genomic and epigenetic features in ovarian cancer

PloS one, 2011-12, Vol.6 (12), p.e28503

2011

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RNA Sequencing of Primary Cutaneous and Breast-Implant Associated Anaplastic Large Cell Lymphomas Reveals Infrequent Fusion Transcripts and Upregulation of PI3K/AKT Signaling via Neurotrophin Pathway Genes

Cancers, 2021-12, Vol.13 (24), p.6174

2021

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Loss of DOK2 induces carboplatin resistance in ovarian cancer via suppression of apoptosis

Gynecologic oncology, 2013-08, Vol.130 (2), p.369-376

2013

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A quantitative proteomics-based signature of platinum sensitivity in ovarian cancer cell lines

Biochemical journal, 2015-02, Vol.465 (3), p.433-442

2015

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Multiregional genetic evolution of metastatic uveal melanoma

Npj genomic medicine, 2021-08, Vol.6 (1), p.70-70, Article 70

2021

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Physical protein–protein interactions predicted from microarrays

Bioinformatics, 2008-11, Vol.24 (22), p.2608-2614

2008

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A recurrent novel MGA-NUTM1 fusion identifies a new subtype of high-grade spindle cell sarcoma

Cold Spring Harbor molecular case studies, 2018-12, Vol.4 (6), p.a003194

2018

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Functional Mutation of SMAC/DIABLO, Encoding a Mitochondrial Proapoptotic Protein, Causes Human Progressive Hearing Loss DFNA64

American journal of human genetics, 2011-07, Vol.89 (1), p.56-66

2011

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Analytical demands to use whole-genome sequencing in precision oncology

Seminars in cancer biology, 2022-09, Vol.84, p.16-22

2022

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Clinical interpretation of whole-genome and whole-transcriptome sequencing for precision oncology

Seminars in cancer biology, 2022-09, Vol.84, p.23-31

2022

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Whole Genome Sequencing-Based Discovery of Structural Variants in Glioblastoma

Methods in molecular biology (Clifton, N.J.), 2018-01, Vol.1741, p.1

2018

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Analytical Validation of Clinical Whole-Genome and Transcriptome Sequencing of Patient-Derived Tumors for Reporting Targetable Variants in Cancer

The Journal of molecular diagnostics : JMD, 2018-11, Vol.20 (6), p.822-835

2018

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Identification of targetable BRAF ΔN486_P490 variant by whole-genome sequencing leading to dabrafenib-induced remission of a BRAF -mutant pancreatic adenocarcinoma

Cold Spring Harbor molecular case studies, 2019-12, Vol.5 (6), p.a004424

2019

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Metastatic pediatric sclerosing epithelioid fibrosarcoma

Cold Spring Harbor molecular case studies, 2021-10, Vol.7 (5), p.a006093

2021

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Abstract 4497: NYGC glioblastoma clinical outcomes pilot study: Discovering therapeutic potential in glioblastoma through integrative genomics

Cancer research (Chicago, Ill.), 2016-07, Vol.76 (14_Supplement), p.4497-4497

2016

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Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma

Neurology. Genetics, 2017-08, Vol.3 (4), p.e164-e164

2017

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Sequencing and curation strategies for identifying candidate glioblastoma treatments

BMC medical genomics, 2019-04, Vol.12 (1), p.56-56, Article 56

2019

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Cell cycle kinases predicted from conserved biophysical properties

Proteins, structure, function, and bioinformatics, 2009-02, Vol.74 (3), p.655-668

2009

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Correction to: Sequencing and curation strategies for identifying candidate glioblastoma treatments

BMC medical genomics, 2019-08, Vol.12 (1), p.114-114, Article 114

2019

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Cataloging proteins in cell cycle control

Methods in molecular biology (Clifton, N.J.), 2004, Vol.241, p.219

2004

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Integrative prediction of gene function and platinum-free survival from genomic and epigenetic features in ovarian cancer

Methods in molecular biology (Clifton, N.J.), 2013, Vol.1049, p.35

2013

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Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs

The oncocytic subtype is genetically distinct from other pancreatic intraductal papillary mucinous neoplasm subtypes

Identification of tumor suppressors and oncogenes from genomic and epigenetic features in ovarian cancer

RNA Sequencing of Primary Cutaneous and Breast-Implant Associated Anaplastic Large Cell Lymphomas Reveals Infrequent Fusion Transcripts and Upregulation of PI3K/AKT Signaling via Neurotrophin Pathway Genes

Loss of DOK2 induces carboplatin resistance in ovarian cancer via suppression of apoptosis

A quantitative proteomics-based signature of platinum sensitivity in ovarian cancer cell lines

Multiregional genetic evolution of metastatic uveal melanoma

Physical protein–protein interactions predicted from microarrays

A recurrent novel MGA-NUTM1 fusion identifies a new subtype of high-grade spindle cell sarcoma

Functional Mutation of SMAC/DIABLO, Encoding a Mitochondrial Proapoptotic Protein, Causes Human Progressive Hearing Loss DFNA64

Analytical demands to use whole-genome sequencing in precision oncology

Clinical interpretation of whole-genome and whole-transcriptome sequencing for precision oncology

Pancreatic intraductal tubulopapillary neoplasm is genetically distinct from intraductal papillary mucinous neoplasm and ductal adenocarcinoma

Impact of Rare and Multiple Concurrent Gene Fusions on Diagnostic DNA Methylation Classifier in Brain Tumors

Whole Genome Sequencing-Based Discovery of Structural Variants in Glioblastoma

Analytical Validation of Clinical Whole-Genome and Transcriptome Sequencing of Patient-Derived Tumors for Reporting Targetable Variants in Cancer

Identification of targetable BRAF ΔN486_P490 variant by whole-genome sequencing leading to dabrafenib-induced remission of a BRAF -mutant pancreatic adenocarcinoma

Metastatic pediatric sclerosing epithelioid fibrosarcoma

Abstract 4497: NYGC glioblastoma clinical outcomes pilot study: Discovering therapeutic potential in glioblastoma through integrative genomics

Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma

Sequencing and curation strategies for identifying candidate glioblastoma treatments

Cell cycle kinases predicted from conserved biophysical properties

Correction to: Sequencing and curation strategies for identifying candidate glioblastoma treatments

Cataloging proteins in cell cycle control

Integrative prediction of gene function and platinum-free survival from genomic and epigenetic features in ovarian cancer

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