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Homology between O-linked GlcNAc transferases and proteins of the glycogen phosphorylase superfamily

Journal of molecular biology, 2001-11, Vol.314 (3), p.365-374

2001

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Thermodynamic propensities of amino acids in the native state ensemble: Implications for fold recognition

Protein science, 2001-05, Vol.10 (5), p.1032-1045

2001

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Protein folding for realists: A timeless phenomenon

Protein science, 1996-06, Vol.5 (6), p.991-1000

1996

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Perturbations of the denatured state ensemble: Modeling their effects on protein stability and folding kinetics

Protein science, 1996-11, Vol.5 (11), p.2343-2352

1996

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Correlation between changes in nuclear magnetic resonance order parameters and conformational entropy: Molecular dynamics simulations of native and denatured staphylococcal nuclease

Proteins, structure, function, and bioinformatics, 2000-02, Vol.38 (2), p.123-133

2000

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Ensemble modulation as an origin of denaturant-independent hydrogen exchange in proteins

Journal of molecular biology, 2000-08, Vol.301 (2), p.247-256

2000

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CASP5 assessment of fold recognition target predictions

Proteins, structure, function, and bioinformatics, 2003, Vol.53 (S6), p.395-409

2003

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Gaps in structurally similar proteins: Towards improvement of multiple sequence alignment

Proteins, structure, function, and bioinformatics, 2004-01, Vol.54 (1), p.71-87

2004

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Statistics of random protein superpositions: p-values for pairwise structure alignment

Journal of computational biology, 2008-04, Vol.15 (3), p.317-355

2008

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Grouping of amino acid types and extraction of amino acid properties from multiple sequence alignments using variance maximization

Proteins, structure, function, and bioinformatics, 2005-11, Vol.61 (3), p.523-534

2005

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Thermodynamic environments in proteins: Fundamental determinants of fold specificity

Protein science, 2002-08, Vol.11 (8), p.1945-1957

2002

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Correlation Between Changes in Nuclear Magnetic Resonance Order Parameters and Conformational Entropy: Molecular Dynamics Simulations of Native and Denatured Staphylococcal Nuclease

Proteins, structure, function, and bioinformatics, 2000-02, Vol.38 (2), p.123-133

2000

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The ensemble nature of allostery

Nature (London), 2014-04, Vol.508 (7496), p.331-339

2014

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Structural and Energetic Basis of Allostery

Annual review of biophysics, 2012-06, Vol.41 (1), p.585-609

2012

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Genetically tunable frustration controls allostery in an intrinsically disordered transcription factor

eLife, 2017-10, Vol.6

2017

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Tumor Susceptibility Gene 101 Regulates the Glucocorticoid Receptor through Disorder-Mediated Allostery

Biochemistry (Easton), 2021-06, Vol.60 (21), p.1647-1657

2021

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Hidden dynamic signatures drive substrate selectivity in the disordered phosphoproteome

Proceedings of the National Academy of Sciences - PNAS, 2020-09, Vol.117 (38), p.23606-23616

2020

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A Thermodynamic Atlas of Proteomes Reveals Energetic Innovation across the Tree of Life

Molecular biology and evolution, 2022-03, Vol.39 (3)

2022

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Ensemble-based energetic differences between Protein Data Bank structures and AlphaFold2 models

Biophysical journal, 2024-02, Vol.123 (3), p.337a-337a

2024

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Ensemble allosteric model: energetic frustration within the intrinsically disordered glucocorticoid receptor

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2018-06, Vol.373 (1749), p.20170175

2018

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Conserved allosteric ensembles in disordered proteins using TROSY/anti-TROSY R2-filtered spectroscopy

Biophysical journal, 2021-06, Vol.120 (12), p.2498-2510

2021

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Conserved allosteric ensembles in disordered proteins using TROSY/anti-TROSY R 2 -filtered spectroscopy

Biophysical journal, 2021-06

2021

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The role of negative selection in protein evolution revealed through the energetics of the native sate ensemble

Proteins, structure, function, and bioinformatics, 2018-12, Vol.86 (12), p.1313-1313

2018

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The role of negative selection in protein evolution revealed through the energetics of the native state ensemble

Proteins, structure, function, and bioinformatics, 2016-04, Vol.84 (4), p.435-447

2016

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The role of protein conformational fluctuations in allostery, function, and evolution

Biophysical chemistry, 2011-11, Vol.159 (1), p.129-141

2011

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Homology between O-linked GlcNAc transferases and proteins of the glycogen phosphorylase superfamily

Thermodynamic propensities of amino acids in the native state ensemble: Implications for fold recognition

Protein folding for realists: A timeless phenomenon

Perturbations of the denatured state ensemble: Modeling their effects on protein stability and folding kinetics

Correlation between changes in nuclear magnetic resonance order parameters and conformational entropy: Molecular dynamics simulations of native and denatured staphylococcal nuclease

Ensemble modulation as an origin of denaturant-independent hydrogen exchange in proteins

CASP5 assessment of fold recognition target predictions

Gaps in structurally similar proteins: Towards improvement of multiple sequence alignment

Statistics of random protein superpositions: p-values for pairwise structure alignment

Grouping of amino acid types and extraction of amino acid properties from multiple sequence alignments using variance maximization

Thermodynamic environments in proteins: Fundamental determinants of fold specificity

Correlation Between Changes in Nuclear Magnetic Resonance Order Parameters and Conformational Entropy: Molecular Dynamics Simulations of Native and Denatured Staphylococcal Nuclease

The ensemble nature of allostery

Structural and Energetic Basis of Allostery

Genetically tunable frustration controls allostery in an intrinsically disordered transcription factor

Tumor Susceptibility Gene 101 Regulates the Glucocorticoid Receptor through Disorder-Mediated Allostery

Hidden dynamic signatures drive substrate selectivity in the disordered phosphoproteome

A Thermodynamic Atlas of Proteomes Reveals Energetic Innovation across the Tree of Life

Ensemble-based energetic differences between Protein Data Bank structures and AlphaFold2 models

Ensemble allosteric model: energetic frustration within the intrinsically disordered glucocorticoid receptor

Conserved allosteric ensembles in disordered proteins using TROSY/anti-TROSY R2-filtered spectroscopy

Conserved allosteric ensembles in disordered proteins using TROSY/anti-TROSY R 2 -filtered spectroscopy

The role of negative selection in protein evolution revealed through the energetics of the native sate ensemble

The role of negative selection in protein evolution revealed through the energetics of the native state ensemble

The role of protein conformational fluctuations in allostery, function, and evolution

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