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Origin of the Yeast Whole-Genome Duplication

PLoS biology, 2015-08, Vol.13 (8), p.e1002221-e1002221

Wolfe, Kenneth H

2015

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An Evolutionary Perspective on Yeast Mating-Type Switching

Genetics (Austin), 2017-05, Vol.206 (1), p.9-32

2017

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GenomeVx: simple web-based creation of editable circular chromosome maps

Bioinformatics, 2008-03, Vol.24 (6), p.861-862

2008

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Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names

PLoS pathogens, 2018-07, Vol.14 (7), p.e1007138-e1007138

2018

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Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

The Plant cell, 2004-07, Vol.16 (7), p.1667-1678

2004

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Identification of genetic variants of the industrial yeast Komagataella phaffii (Pichia pastoris) that contribute to increased yields of secreted heterologous proteins

PLoS biology, 2022-12, Vol.20 (12), p.e3001877-e3001877

2022

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Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

The Plant cell, 2004-07, Vol.16 (7), p.1679-1691

2004

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Evolutionary restoration of fertility in an interspecies hybrid yeast, by whole-genome duplication after a failed mating-type switch

PLoS biology, 2017-05, Vol.15 (5), p.e2002128-e2002128

2017

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The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

Genome research, 2005-10, Vol.15 (10), p.1456

2005

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A widespread inversion polymorphism conserved among Saccharomyces species is caused by recurrent homogenization of a sporulation gene family

PLoS genetics, 2022-11, Vol.18 (11), p.e1010525-e1010525

2022

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SMURF: Genomic mapping of fungal secondary metabolite clusters

Fungal genetics and biology, 2010-09, Vol.47 (9), p.736-741

2010

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Mating-type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locus Saccharomyces cerevisiae system

Proceedings of the National Academy of Sciences - PNAS, 2014-11, Vol.111 (45), p.15871-15871

2014

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Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome

PLoS genetics, 2009-05, Vol.5 (5), p.e1000485-e1000485

2009

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RNAi in Budding Yeast

Science (American Association for the Advancement of Science), 2009-10, Vol.326 (5952), p.544-550

2009

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The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis

PLoS genetics, 2015-10, Vol.11 (10), p.e1005626-e1005626

2015

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Mechanisms of chromosome number evolution in yeast

PLoS genetics, 2011-07, Vol.7 (7), p.e1002190

2011

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Multiple Origins of the Pathogenic Yeast Candida orthopsilosis by Separate Hybridizations between Two Parental Species

PLoS genetics, 2016-11, Vol.12 (11), p.e1006404-e1006404

2016

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Sequence and analysis of the genome of the pathogenic yeast Candida orthopsilosis

PloS one, 2012-04, Vol.7 (4), p.e35750

2012

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A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

Genome research, 2003-02, Vol.13 (2), p.137

2003

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A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach

BMC bioinformatics, 2012-09, Vol.13 (1), p.237-237, Article 237

2012

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Evolutionary instability of CUG-Leu in the genetic code of budding yeasts

Nature communications, 2018-05, Vol.9 (1), p.1887-8, Article 1887

2018

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Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi

Genome Biology, 2008-01, Vol.9 (1), p.R18-R18

2008

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Comparative genome analysis and gene finding in Candida species using CGOB

Molecular biology and evolution, 2013-06, Vol.30 (6), p.1281-1291

2013

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Preferential Subfunctionalization of Slow-Evolving Genes after Allopolyploidization in Xenopus laevis

Proceedings of the National Academy of Sciences - PNAS, 2008-06, Vol.105 (24), p.8333-8338

2008

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Flip/flop mating-type switching in the methylotrophic yeast Ogataea polymorpha is regulated by an Efg1-Rme1-Ste12 pathway

PLoS genetics, 2017-11, Vol.13 (11), p.e1007092-e1007092

2017

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Origin of the Yeast Whole-Genome Duplication

An Evolutionary Perspective on Yeast Mating-Type Switching

GenomeVx: simple web-based creation of editable circular chromosome maps

Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names

Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes

Identification of genetic variants of the industrial yeast Komagataella phaffii (Pichia pastoris) that contribute to increased yields of secreted heterologous proteins

Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution

Evolutionary restoration of fertility in an interspecies hybrid yeast, by whole-genome duplication after a failed mating-type switch

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

A widespread inversion polymorphism conserved among Saccharomyces species is caused by recurrent homogenization of a sporulation gene family

SMURF: Genomic mapping of fungal secondary metabolite clusters

Mating-type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locus Saccharomyces cerevisiae system

Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome

RNAi in Budding Yeast

The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis

Mechanisms of chromosome number evolution in yeast

Multiple Origins of the Pathogenic Yeast Candida orthopsilosis by Separate Hybridizations between Two Parental Species

Sequence and analysis of the genome of the pathogenic yeast Candida orthopsilosis

A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach

Evolutionary instability of CUG-Leu in the genetic code of budding yeasts

Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi

Comparative genome analysis and gene finding in Candida species using CGOB

Preferential Subfunctionalization of Slow-Evolving Genes after Allopolyploidization in Xenopus laevis

Flip/flop mating-type switching in the methylotrophic yeast Ogataea polymorpha is regulated by an Efg1-Rme1-Ste12 pathway

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