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BCL::Fold--de novo prediction of complex and large protein topologies by assembly of secondary structure elements

PloS one, 2012-11, Vol.7 (11), p.e49240-e49240

2012

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BCL::Score--knowledge based energy potentials for ranking protein models represented by idealized secondary structure elements

PloS one, 2012-11, Vol.7 (11), p.e49242-e49242

2012

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Structure and mechanism of the phage T4 recombination mediator protein UvsY

Proceedings of the National Academy of Sciences - PNAS, 2016-03, Vol.113 (12), p.3275-3280

2016

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Solvent accessible surface area approximations for rapid and accurate protein structure prediction

Journal of molecular modeling, 2009-09, Vol.15 (9), p.1093-1108

2009

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Simultaneous prediction of protein secondary structure and transmembrane spans

Proteins, structure, function, and bioinformatics, 2013-07, Vol.81 (7), p.1127-1140

2013

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EM-Fold: De Novo Atomic-Detail Protein Structure Determination from Medium-Resolution Density Maps

Structure (London), 2012-03, Vol.20 (3), p.464-478

2012

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BCL::MP-Fold: Folding Membrane Proteins through Assembly of Transmembrane Helices

Structure (London), 2013-07, Vol.21 (7), p.1107-1117

2013

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BCL::MP-fold: Membrane protein structure prediction guided by EPR restraints

Proteins, structure, function, and bioinformatics, 2015-11, Vol.83 (11), p.1947-1962

2015

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Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008

Nature reviews. Drug discovery, 2009-06, Vol.8 (6), p.455-463

2009

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BCL::Fold-Protein topology determination from limited NMR restraints

Proteins, structure, function, and bioinformatics, 2014-04, Vol.82 (4), p.587-595

2014

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EM-Fold: De Novo Folding of α-Helical Proteins Guided by Intermediate-Resolution Electron Microscopy Density Maps

Structure (London), 2009-07, Vol.17 (7), p.990-1003

2009

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BCL::EM-Fit: Rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement

Journal of structural biology, 2011-09, Vol.175 (3), p.264-276

2011

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A unified hydrophobicity scale for multispan membrane proteins

Proteins, structure, function, and bioinformatics, 2009-07, Vol.76 (1), p.13-29

2009

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BCL::SAXS: GPU accelerated Debye method for computation of small angle X-ray scattering profiles: GPU Construction of SAXS Profiles

Proteins, structure, function, and bioinformatics, 2015-08, Vol.83 (8), p.1500-1512

2015

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BCL::SAXS: GPU accelerated Debye method for computation of small angle X-ray scattering profiles

Proteins, structure, function, and bioinformatics, 2015-08, Vol.83 (8), p.1500-1512

2015

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Ab initio protein modeling into CryoEM density maps using EM-Fold

Biopolymers, 2012-09, Vol.97 (9), p.669-677

2012

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BCL::contact-low confidence fold recognition hits boost protein contact prediction and de novo structure determination

Journal of computational biology, 2010-02, Vol.17 (2), p.153-168

2010

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A Unified Hydrophobicity Scale for Multi-Span Membrane Proteins

Proteins, structure, function, and bioinformatics, 2009-07, Vol.76 (1), p.13-29

2009

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EM-Fold: de Novo Folding of a-Helical Proteins Guided by Intermediate-Resolution Electron Microscopy Density Maps

Structure (London), 2009-07, Vol.17 (7), p.990-1003

2009

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Cryo-EM Guided de novo Protein Fold Elucidation

Biophysical journal, 2009-02, Vol.96 (3), p.654a-654a

2009

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Bcl::Cluster: A method for clustering biological molecules coupled with visualization in the Pymol Molecular Graphics System

2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 2011-02, Vol.2011, p.13-18

2011

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Poster: GPU-accelerated artificial neural network for QSAR modeling

2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), 2011, p.254-254

2011

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GPU-accelerated machine learning techniques enable QSAR modeling of large HTS data

2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2012, p.314-320

2012

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BCL::Fold--de novo prediction of complex and large protein topologies by assembly of secondary structure elements

BCL::Score--knowledge based energy potentials for ranking protein models represented by idealized secondary structure elements

Structure and mechanism of the phage T4 recombination mediator protein UvsY

Solvent accessible surface area approximations for rapid and accurate protein structure prediction

Simultaneous prediction of protein secondary structure and transmembrane spans

EM-Fold: De Novo Atomic-Detail Protein Structure Determination from Medium-Resolution Density Maps

BCL::MP-Fold: Folding Membrane Proteins through Assembly of Transmembrane Helices

BCL::MP-fold: Membrane protein structure prediction guided by EPR restraints

Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008

BCL::Fold-Protein topology determination from limited NMR restraints

EM-Fold: De Novo Folding of α-Helical Proteins Guided by Intermediate-Resolution Electron Microscopy Density Maps

BCL::EM-Fit: Rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement

A unified hydrophobicity scale for multispan membrane proteins

BCL::SAXS: GPU accelerated Debye method for computation of small angle X-ray scattering profiles: GPU Construction of SAXS Profiles

BCL::SAXS: GPU accelerated Debye method for computation of small angle X-ray scattering profiles

Ab initio protein modeling into CryoEM density maps using EM-Fold

BCL::contact-low confidence fold recognition hits boost protein contact prediction and de novo structure determination

A Unified Hydrophobicity Scale for Multi-Span Membrane Proteins

EM-Fold: de Novo Folding of a-Helical Proteins Guided by Intermediate-Resolution Electron Microscopy Density Maps

Cryo-EM Guided de novo Protein Fold Elucidation

Bcl::Cluster: A method for clustering biological molecules coupled with visualization in the Pymol Molecular Graphics System

Poster: GPU-accelerated artificial neural network for QSAR modeling

GPU-accelerated machine learning techniques enable QSAR modeling of large HTS data

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