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Microbiome in Colorectal Cancer: How to Get from Meta-omics to Mechanism?

Trends in microbiology (Regular ed.), 2020-05, Vol.28 (5), p.401-423

2020

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The nasal and gut microbiome in Parkinson's disease and idiopathic rapid eye movement sleep behavior disorder

Movement disorders, 2018-01, Vol.33 (1), p.88-98

2018

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The human gut microbiome in health: establishment and resilience of microbiota over a lifetime

Environmental microbiology, 2016-07, Vol.18 (7), p.2103-2116

2016

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A microfluidics-based in vitro model of the gastrointestinal human–microbe interface

Nature communications, 2016-05, Vol.7 (1), p.11535-11535, Article 11535

2016

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A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility

Cell, 2016-11, Vol.167 (5), p.1339-1353.e21

2016

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Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota

Nature biotechnology, 2017-01, Vol.35 (1), p.81-89

2017

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Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential

Nature communications, 2018-11, Vol.9 (1), p.5091-14, Article 5091

2018

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Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

Nature (London), 2013-08, Vol.500 (7461), p.232-236

2013

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Extensive transmission of microbes along the gastrointestinal tract

eLife, 2019-02, Vol.8

2019

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Fusobacterium nucleatum Extracellular Vesicles Modulate Gut Epithelial Cell Innate Immunity via FomA and TLR2

Frontiers in immunology, 2020-12, Vol.11, p.583644-583644

2020

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Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life

Frontiers in microbiology, 2017-05, Vol.8, p.738-738

2017

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PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data

Microbiome, 2021-02, Vol.9 (1), p.49-49, Article 49

2021

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Sources and Functions of Extracellular Small RNAs in Human Circulation

Annual review of nutrition, 2016-07, Vol.36 (1), p.301-336

2016

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Resolving host–microbe interactions in the gut: the promise of in vitro models to complement in vivo research

Current opinion in microbiology, 2018-08, Vol.44, p.28-33

2018

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Administration of Exogenous Melatonin Improves the Diurnal Rhythms of the Gut Microbiota in Mice Fed a High-Fat Diet

mSystems, 2020-05, Vol.5 (3)

2020

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Human Gut Microbiome: Function Matters

Trends in microbiology (Regular ed.), 2018-07, Vol.26 (7), p.563-574

2018

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The complex exogenous RNA spectra in human plasma: an interface with human gut biota?

PloS one, 2012-12, Vol.7 (12), p.e51009-e51009

2012

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Evolution of the murine gut resistome following broad-spectrum antibiotic treatment

Nature communications, 2022-04, Vol.13 (1), p.2296-2296, Article 2296

2022

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Long COVID Classification: Findings from a Clustering Analysis in the Predi-COVID Cohort Study

International journal of environmental research and public health, 2022-11, Vol.19 (23), p.16018

2022

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Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia

PloS one, 2014-04, Vol.9 (4), p.e95567-e95567

2014

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The microbiome of cryospheric ecosystems

Nature communications, 2022-06, Vol.13 (1), p.3087-3087, Article 3087

2022

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Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

Nature communications, 2021-12, Vol.12 (1), p.7305-15, Article 7305

2021

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Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples

mSystems, 2019-09, Vol.4 (5)

2019

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Metaproteomics provides functional insight into activated sludge wastewater treatment

PloS one, 2008-03, Vol.3 (3), p.e1778-e1778

2008

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Mechanisms of Persistence of the Ammonia-Oxidizing Bacteria Nitrosomonas to the Biocide Free Nitrous Acid

Environmental science & technology, 2018-05, Vol.52 (9), p.5386-5397

2018

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Microbiome in Colorectal Cancer: How to Get from Meta-omics to Mechanism?

The nasal and gut microbiome in Parkinson's disease and idiopathic rapid eye movement sleep behavior disorder

The human gut microbiome in health: establishment and resilience of microbiota over a lifetime

A microfluidics-based in vitro model of the gastrointestinal human–microbe interface

A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility

Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota

Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential

Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

Extensive transmission of microbes along the gastrointestinal tract

Fusobacterium nucleatum Extracellular Vesicles Modulate Gut Epithelial Cell Innate Immunity via FomA and TLR2

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life

PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data

Sources and Functions of Extracellular Small RNAs in Human Circulation

Resolving host–microbe interactions in the gut: the promise of in vitro models to complement in vivo research

Administration of Exogenous Melatonin Improves the Diurnal Rhythms of the Gut Microbiota in Mice Fed a High-Fat Diet

Human Gut Microbiome: Function Matters

The complex exogenous RNA spectra in human plasma: an interface with human gut biota?

Evolution of the murine gut resistome following broad-spectrum antibiotic treatment

Long COVID Classification: Findings from a Clustering Analysis in the Predi-COVID Cohort Study

Systematic design of 18S rRNA gene primers for determining eukaryotic diversity in microbial consortia

The microbiome of cryospheric ecosystems

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples

Metaproteomics provides functional insight into activated sludge wastewater treatment

Mechanisms of Persistence of the Ammonia-Oxidizing Bacteria Nitrosomonas to the Biocide Free Nitrous Acid

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