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Bayesian correlated clustering to integrate multiple datasets

Bioinformatics, 2012-12, Vol.28 (24), p.3290-3297

2012

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High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation

The Plant cell, 2011-03, Vol.23 (3), p.873-894

2011

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How to infer gene networks from expression profiles, revisited

Interface focus, 2011-12, Vol.1 (6), p.857-870

2011

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Exploring the Energy Landscapes of Protein Folding Simulations with Bayesian Computation

Biophysical journal, 2012-02, Vol.102 (4), p.878-886

2012

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Improving protein-protein interaction prediction using evolutionary information from low-quality MSAs

PloS one, 2017-02, Vol.12 (2), p.e0169356

2017

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Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks

Bioinformatics (Oxford, England), 2012-06, Vol.28 (12), p.i233-i241

2012

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Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements

BMC bioinformatics, 2011-10, Vol.12 (1), p.399-399, Article 399

2011

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Accelerating Bayesian hierarchical clustering of time series data with a randomised algorithm

PloS one, 2013-04, Vol.8 (4), p.e59795-e59795

2013

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R/BHC: fast Bayesian hierarchical clustering for microarray data

BMC bioinformatics, 2009-08, Vol.10 (1), p.242-242, Article 242

2009

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CSI: a nonparametric Bayesian approach to network inference from multiple perturbed time series gene expression data

Statistical applications in genetics and molecular biology, 2015-06, Vol.14 (3), p.307-310

2015

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A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves

The Plant journal : for cell and molecular biology, 2013-07, Vol.75 (1), p.26-39

2013

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Inferring Gene Regulatory Networks from Multiple Datasets

Methods in molecular biology (Clifton, N.J.), 2019, Vol.1883, p.251

2019

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Time‐series transcriptomics reveals a BBX32‐directed control of acclimation to high light in mature Arabidopsis leaves

The Plant journal : for cell and molecular biology, 2021-09, Vol.107 (5), p.1363-1386

2021

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ParticleMDI: particle Monte Carlo methods for the cluster analysis of multiple datasets with applications to cancer subtype identification

Advances in data analysis and classification, 2020-06, Vol.14 (2), p.463-484

2020

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Predicting protein β-sheet contacts using a maximum entropy-based correlated mutation measure

Bioinformatics, 2013-03, Vol.29 (5), p.580-587

2013

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Inferring orthologous gene regulatory networks using interspecies data fusion

Bioinformatics (Oxford, England), 2015-06, Vol.31 (12), p.i97-i105

2015

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Bringing numerous methods for expression and promoter analysis to a public cloud computing service

Bioinformatics, 2018-03, Vol.34 (5), p.884-886

2018

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A Bayesian approach to reconstructing genetic regulatory networks with hidden factors

Bioinformatics, 2005-02, Vol.21 (3), p.349-356

2005

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Modeling T-cell activation using gene expression profiling and state-space models

Bioinformatics, 2004-06, Vol.20 (9), p.1361-1372

2004

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Discovering transcriptional modules by Bayesian data integration

Bioinformatics, 2010-06, Vol.26 (12), p.i158-i167

2010

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Efficient Parameter Estimation of Generalizable Coarse-Grained Protein Force Fields Using Contrastive Divergence: A Maximum Likelihood Approach

Journal of chemical theory and computation, 2013-12, Vol.9 (12), p.5718-5733

2013

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Bayesian correlated clustering to integrate multiple datasets

High-Resolution Temporal Profiling of Transcripts during Arabidopsis Leaf Senescence Reveals a Distinct Chronology of Processes and Regulation

Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis

How to infer gene networks from expression profiles, revisited

Exploring the Energy Landscapes of Protein Folding Simulations with Bayesian Computation

Improving protein-protein interaction prediction using evolutionary information from low-quality MSAs

Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks

Bayesian hierarchical clustering for microarray time series data with replicates and outlier measurements

Accelerating Bayesian hierarchical clustering of time series data with a randomised algorithm

R/BHC: fast Bayesian hierarchical clustering for microarray data

CSI: a nonparametric Bayesian approach to network inference from multiple perturbed time series gene expression data

A local regulatory network around three NAC transcription factors in stress responses and senescence in Arabidopsis leaves

Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000

Inferring Gene Regulatory Networks from Multiple Datasets

Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis

Time‐series transcriptomics reveals a BBX32‐directed control of acclimation to high light in mature Arabidopsis leaves

ParticleMDI: particle Monte Carlo methods for the cluster analysis of multiple datasets with applications to cancer subtype identification

Predicting protein β-sheet contacts using a maximum entropy-based correlated mutation measure

Inferring orthologous gene regulatory networks using interspecies data fusion

Bringing numerous methods for expression and promoter analysis to a public cloud computing service

A Bayesian approach to reconstructing genetic regulatory networks with hidden factors

Modeling T-cell activation using gene expression profiling and state-space models

The dynamic architecture of the metabolic switch in Streptomyces coelicolor

Discovering transcriptional modules by Bayesian data integration

Efficient Parameter Estimation of Generalizable Coarse-Grained Protein Force Fields Using Contrastive Divergence: A Maximum Likelihood Approach

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