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jViz.RNA 4.0-Visualizing pseudoknots and RNA editing employing compressed tree graphs

PloS one, 2019-05, Vol.14 (5), p.e0210281-e0210281

2019

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Numerical integration methods and layout improvements in the context of dynamic RNA visualization

BMC bioinformatics, 2017-05, Vol.18 (1), p.282-282, Article 282

2017

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SigTools: exploratory visualization for genomic signals

Bioinformatics, 2022-01, Vol.38 (4), p.1126-1128

2022

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Continuous chromatin state feature annotation of the human epigenome

Bioinformatics, 2022-05, Vol.38 (11), p.3029-3036

2022

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RNA Visualization: Relevance and the Current State-of-the-Art Focusing on Pseudoknots

IEEE/ACM transactions on computational biology and bioinformatics, 2017-05, Vol.14 (3), p.696-712

2017

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Comparison of P-RnaPredict and mfold—algorithms for RNA secondary structure prediction

Bioinformatics, 2006-04, Vol.22 (8), p.934-942

2006

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SARNA-Predict: Accuracy Improvement of RNA Secondary Structure Prediction Using Permutation-Based Simulated Annealing

IEEE/ACM transactions on computational biology and bioinformatics, 2010-10, Vol.7 (4), p.727-740

2010

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Ebbie: automated analysis and storage of small RNA cloning data using a dynamic web server

BMC bioinformatics, 2006-04, Vol.7 (1), p.185-185, Article 185

2006

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RnaPredict-An Evolutionary Algorithm for RNA Secondary Structure Prediction

IEEE/ACM transactions on computational biology and bioinformatics, 2008-01, Vol.5 (1), p.25-41

2008

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A permutation based simulated annealing algorithm to predict pseudoknotted RNA secondary structures

International journal of bioinformatics research and applications, 2015, Vol.11 (5), p.375

2015

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A study of different annealing schedules in SARNA-predict: A permutation based SA algorithm for RNA folding

International journal of intelligent computing and cybernetics, 2015-01, Vol.8 (2), p.152-171

2015

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A Comparison of Machine Learning Models for Predicting CRISPR/Cas On-target Efficacy

2023 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2023, p.1-8

2023

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A permutation-based genetic algorithm for the RNA folding problem: a critical look at selection strategies, crossover operators, and representation issues

BioSystems, 2003-11, Vol.72 (1), p.29-41

2003

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EvoDNN - Evolving Weights, Biases, and Activation Functions in a Deep Neural Network

2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2022, p.1-9

2022

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Review of "The ten Most Wanted Solutions in Protein Bioinformatics", by Anna Tramontano

BioMedical Engineering OnLine, 2006-01, Vol.5 (1), p.1-1

Wiese, Kay C

2006

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Automatic and Strategic Processing of Threat Cues in Patients With Chronic Pain: A Modified Stroop Evaluation

The Clinical journal of pain, 2000-06, Vol.16 (2), p.144-154

2000

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A study of RNA secondary structure prediction using different mutation operators

IEEE Congress on Evolutionary Computation, 2010, p.1-7

2010

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Diploidy in evolutionary algorithms for dynamic optimization problems: A best-chromosome-wins dominance mechanism

International journal of intelligent computing and cybernetics, 2015-11, Vol.8 (4), p.312-329

2015

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Diploidy in evolutionary algorithms for dynamic optimization problems

International journal of intelligent computing and cybernetics, 2015-11, Vol.8 (4), p.312-329

2015

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Keep-Best Reproduction : A local family competition selection strategy and the environment it flourishes in

Constraints : an international journal, 2001-10, Vol.6 (4), p.399-422

2001

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A study of different annealing schedules in SARNA-predict

International journal of intelligent computing and cybernetics, 2015-06, Vol.8 (2), p.152-171

2015

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AGED-ViT: A Novel Transformer-Based Framework for Diagnosis of Alzheimer's Disease by Leveraging Gene Expression Data

2024 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2024, p.1-7

2024

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Navitas/Optimus: A Novel Computational Tool for enhanced CRISPR/Cas Genome Editing

Proceedings of the Canadian Conference on Artificial Intelligence, 2023-06

2023

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RNA structure as permutation: A GA approach comparing different genetic sequencing operators

Lecture notes in computer science, 2003, p.511-520

2003

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Improving splice-junctions classification employing a novel encoding schema and decision-tree

2011 IEEE Congress of Evolutionary Computation (CEC), 2011, p.1302-1307

2011

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jViz.RNA 4.0-Visualizing pseudoknots and RNA editing employing compressed tree graphs

Numerical integration methods and layout improvements in the context of dynamic RNA visualization

SigTools: exploratory visualization for genomic signals

Continuous chromatin state feature annotation of the human epigenome

RNA Visualization: Relevance and the Current State-of-the-Art Focusing on Pseudoknots

Comparison of P-RnaPredict and mfold—algorithms for RNA secondary structure prediction

SARNA-Predict: Accuracy Improvement of RNA Secondary Structure Prediction Using Permutation-Based Simulated Annealing

Ebbie: automated analysis and storage of small RNA cloning data using a dynamic web server

RnaPredict-An Evolutionary Algorithm for RNA Secondary Structure Prediction

A permutation based simulated annealing algorithm to predict pseudoknotted RNA secondary structures

A study of different annealing schedules in SARNA-predict: A permutation based SA algorithm for RNA folding

A Comparison of Machine Learning Models for Predicting CRISPR/Cas On-target Efficacy

A permutation-based genetic algorithm for the RNA folding problem: a critical look at selection strategies, crossover operators, and representation issues

EvoDNN - Evolving Weights, Biases, and Activation Functions in a Deep Neural Network

Review of "The ten Most Wanted Solutions in Protein Bioinformatics", by Anna Tramontano

Automatic and Strategic Processing of Threat Cues in Patients With Chronic Pain: A Modified Stroop Evaluation

A study of RNA secondary structure prediction using different mutation operators

Diploidy in evolutionary algorithms for dynamic optimization problems: A best-chromosome-wins dominance mechanism

Diploidy in evolutionary algorithms for dynamic optimization problems

Keep-Best Reproduction : A local family competition selection strategy and the environment it flourishes in

A study of different annealing schedules in SARNA-predict

AGED-ViT: A Novel Transformer-Based Framework for Diagnosis of Alzheimer's Disease by Leveraging Gene Expression Data

Navitas/Optimus: A Novel Computational Tool for enhanced CRISPR/Cas Genome Editing

RNA structure as permutation: A GA approach comparing different genetic sequencing operators

Improving splice-junctions classification employing a novel encoding schema and decision-tree

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