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Nanopore-Based Measurements of Protein Size, Fluctuations, and Conformational Changes

ACS nano, 2017-06, Vol.11 (6), p.5706-5716

2017

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SMOG 2: A Versatile Software Package for Generating Structure-Based Models

PLoS computational biology, 2016-03, Vol.12 (3), p.e1004794-e1004794

2016

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Steric interactions lead to collective tilting motion in the ribosome during mRNA–tRNA translocation

Nature communications, 2016-02, Vol.7 (1), p.10586-10586, Article 10586

2016

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How EF-Tu can contribute to efficient proofreading of aa-tRNA by the ribosome

Nature communications, 2016-10, Vol.7 (1), p.13314-13314, Article 13314

2016

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The Shadow Map: A General Contact Definition for Capturing the Dynamics of Biomolecular Folding and Function

The journal of physical chemistry. B, 2012-07, Vol.116 (29), p.8692-8702

2012

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Connecting the kinetics and energy landscape of tRNA translocation on the ribosome

PLoS computational biology, 2013-03, Vol.9 (3), p.e1003003-e1003003

2013

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A steric gate controls P/E hybrid-state formation of tRNA on the ribosome

Nature communications, 2020-11, Vol.11 (1), p.5706-5706, Article 5706

2020

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Conformational Transitions of Adenylate Kinase: Switching by Cracking

Journal of molecular biology, 2007-03, Vol.366 (5), p.1661-1671

2007

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Ratchet, swivel, tilt and roll: a complete description of subunit rotation in the ribosome

Nucleic acids research, 2023-01, Vol.51 (2), p.919-934

2023

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Mitoribosome structure with cofactors and modifications reveals mechanism of ligand binding and interactions with L1 stalk

Nature communications, 2024-05, Vol.15 (1), p.4272-4272, Article 4272

2024

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Diffusion of tRNA inside the ribosome is position-dependent

The Journal of chemical physics, 2019-08, Vol.151 (8), p.085102-085102

2019

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Simulations of Phage T7 Capsid Expansion Reveal the Role of Molecular Sterics on Dynamics

Viruses, 2020-11, Vol.12 (11), p.1273

2020

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Distinguishing Biomolecular Pathways and Metastable States

Journal of chemical theory and computation, 2019-11, Vol.15 (11), p.6482-6490

2019

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Disorder guides protein function

Proceedings of the National Academy of Sciences - PNAS, 2013-04, Vol.110 (18), p.7114-7115

Whitford, Paul C.

2013

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Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites

Nature (London), 2010-12, Vol.468 (7324), p.713-716

2010

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Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing

eLife, 2020-10, Vol.9 (2020)

2020

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What protein folding teaches us about biological function and molecular machines

Current opinion in structural biology, 2015-02, Vol.30, p.57-62

2015

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Probing remote residues important for catalysis in Escherichia coli ornithine transcarbamoylase

PloS one, 2020-02, Vol.15 (2), p.e0228487

2020

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Order and disorder control the functional rearrangement of influenza hemagglutinin

Proceedings of the National Academy of Sciences - PNAS, 2014-08, Vol.111 (33), p.12049-12054

2014

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Topography of funneled landscapes determines the thermodynamics and kinetics of protein folding

Proceedings of the National Academy of Sciences - PNAS, 2012-09, Vol.109 (39), p.15763-15768

2012

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The energy landscape of the ribosome

Biopolymers, 2024-03, Vol.115 (2), p.e23570-n/a

2024

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Excited states of ribosome translocation revealed through integrative molecular modeling

Proceedings of the National Academy of Sciences - PNAS, 2011-11, Vol.108 (47), p.18943-18948

2011

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Identifying Strategies to Experimentally Probe Multidimensional Dynamics in the Ribosome

The journal of physical chemistry. B, 2022-10, Vol.126 (42), p.8460-8471

2022

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Dependence of P/E tRNA hybrid formation on subunit rotation in the ribosome

Biophysical journal, 2023-02, Vol.122 (3), p.490a-490a

2023

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Extracting function from a β-trefoil folding motif

Proceedings of the National Academy of Sciences - PNAS, 2008-07, Vol.105 (30), p.10384-10389

2008

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Nanopore-Based Measurements of Protein Size, Fluctuations, and Conformational Changes

SMOG 2: A Versatile Software Package for Generating Structure-Based Models

Steric interactions lead to collective tilting motion in the ribosome during mRNA–tRNA translocation

How EF-Tu can contribute to efficient proofreading of aa-tRNA by the ribosome

The Shadow Map: A General Contact Definition for Capturing the Dynamics of Biomolecular Folding and Function

Connecting the kinetics and energy landscape of tRNA translocation on the ribosome

A steric gate controls P/E hybrid-state formation of tRNA on the ribosome

Conformational Transitions of Adenylate Kinase: Switching by Cracking

Ratchet, swivel, tilt and roll: a complete description of subunit rotation in the ribosome

Mitoribosome structure with cofactors and modifications reveals mechanism of ligand binding and interactions with L1 stalk

Diffusion of tRNA inside the ribosome is position-dependent

Simulations of Phage T7 Capsid Expansion Reveal the Role of Molecular Sterics on Dynamics

Distinguishing Biomolecular Pathways and Metastable States

Disorder guides protein function

Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites

Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing

What protein folding teaches us about biological function and molecular machines

Probing remote residues important for catalysis in Escherichia coli ornithine transcarbamoylase

Order and disorder control the functional rearrangement of influenza hemagglutinin

Topography of funneled landscapes determines the thermodynamics and kinetics of protein folding

The energy landscape of the ribosome

Excited states of ribosome translocation revealed through integrative molecular modeling

Identifying Strategies to Experimentally Probe Multidimensional Dynamics in the Ribosome

Dependence of P/E tRNA hybrid formation on subunit rotation in the ribosome

Extracting function from a β-trefoil folding motif

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