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Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma

BMC genomics, 2006-10, Vol.7 (1), p.252-252, Article 252

2006

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Clusternomics: Integrative context-dependent clustering for heterogeneous datasets

PLoS computational biology, 2017-10, Vol.13 (10), p.e1005781-e1005781

2017

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A meta-analysis of multiple matched aCGH/expression cancer datasets reveals regulatory relationships and pathway enrichment of potential oncogenes

PloS one, 2019-07, Vol.14 (7), p.e0213221-e0213221

2019

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A comparison of machine learning and Bayesian modelling for molecular serotyping

BMC genomics, 2017-08, Vol.18 (1), p.606-606, Article 606

2017

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BTR: training asynchronous Boolean models using single-cell expression data

BMC bioinformatics, 2016-09, Vol.17 (1), p.355-355, Article 355

2016

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Factor analysis for gene regulatory networks and transcription factor activity profiles

BMC bioinformatics, 2007-02, Vol.8 (1), p.61-61, Article 61

2007

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A meta-analysis of multiple matched copy number and transcriptomics data sets for inferring gene regulatory relationships

PloS one, 2014-08, Vol.9 (8), p.e105522-e105522

2014

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STEME: efficient EM to find motifs in large data sets

Nucleic acids research, 2011-10, Vol.39 (18), p.e126

2011

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Modelling of psychosocial and lifestyle predictors of peripartum depressive symptoms associated with distinct risk trajectories: a prospective cohort study

Scientific reports, 2018-08, Vol.8 (1), p.12799-11, Article 12799

2018

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STEME: a robust, accurate motif finder for large data sets

PloS one, 2014-03, Vol.9 (3), p.e90735-e90735

2014

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Comparison of methods for competitive tests of pathway analysis

PloS one, 2012-07, Vol.7 (7), p.e41018-e41018

2012

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Empirical Bayesian models for analysing molecular serotyping microarrays

BMC bioinformatics, 2011-03, Vol.12 (1), p.88-88, Article 88

2011

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Non-replicating Mycobacterium tuberculosis elicits a reduced infectivity profile with corresponding modifications to the cell wall and extracellular matrix

PloS one, 2014-02, Vol.9 (2), p.e87329

2014

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Transcription factor co-localization patterns affect human cell type-specific gene expression

BMC genomics, 2012-06, Vol.13 (1), p.263-263

2012

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The Discovery and Validation of Biomarkers for the Diagnosis of Esophageal Squamous Dysplasia and Squamous Cell Carcinoma

Cancer prevention research (Philadelphia, Pa.), 2016-07, Vol.9 (7), p.558-566

2016

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Testing the utility of an integrated analysis of copy number and transcriptomics datasets for inferring gene regulatory relationships

PloS one, 2013-05, Vol.8 (5), p.e63780-e63780

2013

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Pseudotime estimation: deconfounding single cell time series

Bioinformatics (Oxford, England), 2016-10, Vol.32 (19), p.2973-2980

2016

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Investigating inter-chromosomal regulatory relationships through a comprehensive meta-analysis of matched copy number and transcriptomics data sets

BMC genomics, 2015-11, Vol.16 (972), p.967-967, Article 967

2015

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A comparative study of S/MAR prediction tools

BMC bioinformatics, 2007-03, Vol.8 (1), p.71-71, Article 71

2007

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Displaying R spatial statistics on Google dynamic maps with web applications created by Rwui

International journal of health geographics, 2012-09, Vol.11 (1), p.41-41

2012

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Variable structure motifs for transcription factor binding sites

BMC genomics, 2010-01, Vol.11 (1), p.30-30

2010

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Transcriptional programs: modelling higher order structure in transcriptional control

BMC bioinformatics, 2009-07, Vol.10 (1), p.218-218, Article 218

2009

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The influence of reduced oxygen availability on pathogenicity and gene expression in Mycobacterium tuberculosis

Tuberculosis (Edinburgh, Scotland), 2004-01, Vol.84 (3), p.205-217

2004

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Folding Free Energy Function Selects Native-like Protein Sequences in the Core but Not on the Surface

Proceedings of the National Academy of Sciences - PNAS, 2002-10, Vol.99 (21), p.13554-13559

2002

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Analysis of whole-genome microarray replicates using mixed models

Bioinformatics (Oxford, England), 2003, Vol.19 (1), p.53-61

2003

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Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma

Clusternomics: Integrative context-dependent clustering for heterogeneous datasets

A meta-analysis of multiple matched aCGH/expression cancer datasets reveals regulatory relationships and pathway enrichment of potential oncogenes

A comparison of machine learning and Bayesian modelling for molecular serotyping

BTR: training asynchronous Boolean models using single-cell expression data

Factor analysis for gene regulatory networks and transcription factor activity profiles

A meta-analysis of multiple matched copy number and transcriptomics data sets for inferring gene regulatory relationships

STEME: efficient EM to find motifs in large data sets

Modelling of psychosocial and lifestyle predictors of peripartum depressive symptoms associated with distinct risk trajectories: a prospective cohort study

STEME: a robust, accurate motif finder for large data sets

Comparison of methods for competitive tests of pathway analysis

Empirical Bayesian models for analysing molecular serotyping microarrays

Non-replicating Mycobacterium tuberculosis elicits a reduced infectivity profile with corresponding modifications to the cell wall and extracellular matrix

Transcription factor co-localization patterns affect human cell type-specific gene expression

The Discovery and Validation of Biomarkers for the Diagnosis of Esophageal Squamous Dysplasia and Squamous Cell Carcinoma

Testing the utility of an integrated analysis of copy number and transcriptomics datasets for inferring gene regulatory relationships

Pseudotime estimation: deconfounding single cell time series

Investigating inter-chromosomal regulatory relationships through a comprehensive meta-analysis of matched copy number and transcriptomics data sets

A comparative study of S/MAR prediction tools

Displaying R spatial statistics on Google dynamic maps with web applications created by Rwui

Variable structure motifs for transcription factor binding sites

Transcriptional programs: modelling higher order structure in transcriptional control

The influence of reduced oxygen availability on pathogenicity and gene expression in Mycobacterium tuberculosis

Folding Free Energy Function Selects Native-like Protein Sequences in the Core but Not on the Surface

Analysis of whole-genome microarray replicates using mixed models

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