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Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks

Bioinformatics, 2006-10, Vol.22 (20), p.2523-2531

2006

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Reconstructing Gene Regulatory Networks with Bayesian Networks by Combining Expression Data with Multiple Sources of Prior Knowledge

Statistical Applications in Genetics and Molecular Biology, 2007-05, Vol.6 (1), p.15-Article15

2007

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Chemoprotection mediated by açaí berry (Euterpe oleracea) in white shrimp Litopenaeus vannamei exposed to the cyanotoxin saxitoxin analyzed by in vivo assays and docking modeling

Aquatic toxicology, 2022-05, Vol.246, p.106148-106148, Article 106148

2022

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Graphene oxide and GST-omega enzyme: An interaction that affects arsenic metabolism in the shrimp Litopenaeus vannamei

The Science of the total environment, 2020-05, Vol.716, p.136893-136893, Article 136893

2020

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Phylogenetic analysis, computer modeling and catalytic prediction of an Amazonian soil β-glucosidase against a soybean saponin

Integrative biology (Cambridge), 2022-12, Vol.14 (8-12), p.204

2022

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Inference of regulatory networks with a convergence improved MCMC sampler

BMC bioinformatics, 2015-09, Vol.16 (1), p.306-306, Article 306

2015

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A comparison of classifiers for predicting the class color of fluorescent proteins

Computational biology and chemistry, 2019-12, Vol.83, p.107089-107089, Article 107089

2019

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Decrypting Strong and Weak Single-Walled Carbon Nanotubes Interactions with Mitochondrial Voltage-Dependent Anion Channels Using Molecular Docking and Perturbation Theory

Scientific reports, 2017-10, Vol.7 (1), p.13271-19, Article 13271

2017

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Comparing the reconstruction of regulatory pathways with distinct Bayesian networks inference methods

BMC genomics, 2012, Vol.13 Suppl 5 (Suppl 5), p.S2-S2

Werhli, Adriano V

2012

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Computational MitoTarget Scanning Based on Topological Vacancies of Single-Walled Carbon Nanotubes with the Human Mitochondrial Voltage-Dependent Anion Channel (hVDAC1)

Chemical research in toxicology, 2019-04, Vol.32 (4), p.566-577

2019

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A higher flexibility at the SARS-CoV-2 main protease active site compared to SARS-CoV and its potentialities for new inhibitor virtual screening targeting multi-conformers

Journal of biomolecular structure & dynamics, 2022-01, Vol.40 (19), p.9214-9234

2022

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Predicting the binding properties of single walled carbon nanotubes (SWCNT) with an ADP/ATP mitochondrial carrier using molecular docking, chemoinformatics, and nano-QSBR perturbation theory

RSC advances, 2016-01, Vol.6 (63), p.58680-58693

2016

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Gene regulatory network reconstruction by Bayesian integration of prior knowledge and/or different experimental conditions

Journal of bioinformatics and computational biology, 2008-06, Vol.6 (3), p.543

2008

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Feature Selection Investigation in Machine Learning Docking Scoring Functions

Advances in Bioinformatics and Computational Biology, 2023, Vol.13954, p.58-69

2023

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An Infrastructure to Mine Molecular Descriptors for Ligand Selection on Virtual Screening

BioMed research international, 2014-01, Vol.2014, p.325959-9

2014

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An adaptive machine learning approach to improve automatic iceberg detection from SAR images

ISPRS journal of photogrammetry and remote sensing, 2019-10, Vol.156, p.247-259

2019

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Multi-Agent-Based Simulation of Mycobacterium Tuberculosis Growth

Multi-Agent-Based Simulation XIV, p.131-142

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Bayesian integration of biological prior knowledge into the reconstruction of gene regulatory networks with Bayesian networks

Computational systems bioinformatics. Computational Systems Bioinformatics Conference, 2007, Vol.6, p.85

2007

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Ensemble of Protein Stability upon Point Mutation Predictors

Intelligent Systems, p.73-88

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Inference of Genetic Regulatory Networks Using an Estimation of Distribution Algorithm

Advances in Bioinformatics and Computational Biology, p.148-159

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Reconstructing Gene Regulatory Networks with Bayesian Networks by Combining Expression Data with Multiple Sources of Prior Knowledge

Statistical applications in genetics and molecular biology, 2007-05, Vol.6 (1), p.1282-1282

2007

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Predicting the binding properties of single walled carbon nanotubes (SWCNT) with an ADP/ATP mitochondrial carrier using molecular docking, chemoinformatics, and nano-QSBR perturbation theoryElectronic supplementary information (ESI) available. See DOI: 10.1039/c6ra08883j

2016-06

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An Epsilon-Greedy Mutation Operator Based on Prior Knowledge for GA Convergence and Accuracy Improvement: An Application to Networks Inference

2012 Brazilian Symposium on Neural Networks, 2012, p.67-72

2012

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IEEE_Xplore

Advanced Applications of Bayesian Networks in Systems Biology

Handbook of Statistical Systems Biology, 2011, p.270-289

2011

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Reverse Engineering Gene Regulatory Networks with Various Machine Learning Methods

Analysis of Microarray Data, 2008, p.101-142

2008

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Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks

Reconstructing Gene Regulatory Networks with Bayesian Networks by Combining Expression Data with Multiple Sources of Prior Knowledge

Chemoprotection mediated by açaí berry (Euterpe oleracea) in white shrimp Litopenaeus vannamei exposed to the cyanotoxin saxitoxin analyzed by in vivo assays and docking modeling

Graphene oxide and GST-omega enzyme: An interaction that affects arsenic metabolism in the shrimp Litopenaeus vannamei

Phylogenetic analysis, computer modeling and catalytic prediction of an Amazonian soil β-glucosidase against a soybean saponin

Inference of regulatory networks with a convergence improved MCMC sampler

A comparison of classifiers for predicting the class color of fluorescent proteins

Decrypting Strong and Weak Single-Walled Carbon Nanotubes Interactions with Mitochondrial Voltage-Dependent Anion Channels Using Molecular Docking and Perturbation Theory

Comparing the reconstruction of regulatory pathways with distinct Bayesian networks inference methods

Computational MitoTarget Scanning Based on Topological Vacancies of Single-Walled Carbon Nanotubes with the Human Mitochondrial Voltage-Dependent Anion Channel (hVDAC1)

A higher flexibility at the SARS-CoV-2 main protease active site compared to SARS-CoV and its potentialities for new inhibitor virtual screening targeting multi-conformers

Predicting the binding properties of single walled carbon nanotubes (SWCNT) with an ADP/ATP mitochondrial carrier using molecular docking, chemoinformatics, and nano-QSBR perturbation theory

Gene regulatory network reconstruction by Bayesian integration of prior knowledge and/or different experimental conditions

Feature Selection Investigation in Machine Learning Docking Scoring Functions

An Infrastructure to Mine Molecular Descriptors for Ligand Selection on Virtual Screening

An adaptive machine learning approach to improve automatic iceberg detection from SAR images

Multi-Agent-Based Simulation of Mycobacterium Tuberculosis Growth

Bayesian integration of biological prior knowledge into the reconstruction of gene regulatory networks with Bayesian networks

Ensemble of Protein Stability upon Point Mutation Predictors

Inference of Genetic Regulatory Networks Using an Estimation of Distribution Algorithm

Reconstructing Gene Regulatory Networks with Bayesian Networks by Combining Expression Data with Multiple Sources of Prior Knowledge

Predicting the binding properties of single walled carbon nanotubes (SWCNT) with an ADP/ATP mitochondrial carrier using molecular docking, chemoinformatics, and nano-QSBR perturbation theoryElectronic supplementary information (ESI) available. See DOI: 10.1039/c6ra08883j

An Epsilon-Greedy Mutation Operator Based on Prior Knowledge for GA Convergence and Accuracy Improvement: An Application to Networks Inference

Advanced Applications of Bayesian Networks in Systems Biology

Reverse Engineering Gene Regulatory Networks with Various Machine Learning Methods

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