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Ten simple rules for navigating the computational aspect of an interdisciplinary PhD

PLoS computational biology, 2021-02, Vol.17 (2), p.e1008554-e1008554

2021

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Toll-Like Receptors Drive Specific Patterns of Tolerance and Training on Restimulation of Macrophages

Frontiers in immunology, 2018-05, Vol.9, p.933-933

2018

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Age-specific biological and molecular profiling distinguishes paediatric from adult acute myeloid leukaemias

Nature communications, 2018-12, Vol.9 (1), p.5280-14, Article 5280

2018

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IsoVis – a webserver for visualization and annotation of alternative RNA isoforms

Nucleic acids research, 2024-05, Vol.52 (W1), p.W341-W347

2024

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Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease

PLoS genetics, 2017-03, Vol.13 (3), p.e1006641-e1006641

2017

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Transcriptional Profiling of Stem Cells: Moving from Descriptive to Predictive Paradigms

Stem cell reports, 2019-08, Vol.13 (2), p.237-246

2019

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Defining the Role of Nuclear Factor (NF)-κB p105 Subunit in Human Macrophage by Transcriptomic Analysis of NFKB1 Knockout THP1 Cells

Frontiers in immunology, 2021-10, Vol.12, p.669906-669906

2021

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The Impact of APP on Alzheimer-like Pathogenesis and Gene Expression in Down Syndrome iPSC-Derived Neurons

Stem cell reports, 2018-07, Vol.11 (1), p.32-42

2018

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Stemformatics: visualize and download curated stem cell data

Nucleic acids research, 2019-01, Vol.47 (D1), p.D841-D846

2019

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Discovery of NRG1-VII: the myeloid-derived class of NRG1

BMC genomics, 2024-08, Vol.25 (1), p.1-17, Article 814

2024

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Unique properties of a subset of human pluripotent stem cells with high capacity for self-renewal

Nature communications, 2020-05, Vol.11 (1), p.2420-2420, Article 2420

2020

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A simple, scalable approach to building a cross-platform transcriptome atlas

PLoS computational biology, 2020-09, Vol.16 (9), p.e1008219-e1008219

2020

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The Macrophage-Inducible C-Type Lectin, Mincle, Is an Essential Component of the Innate Immune Response to Candida albicans

The Journal of immunology (1950), 2008-06, Vol.180 (11), p.7404-7413

2008

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Mincle Activation and the Syk/Card9 Signaling Axis Are Central to the Development of Autoimmune Disease of the Eye

The Journal of immunology (1950), 2016-04, Vol.196 (7), p.3148-3158

2016

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Australian researchers’ perceptions and experiences with stem cell registration

Stem cell research, 2024-09, Vol.79, p.103482, Article 103482

2024

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Variance of gene expression identifies altered network constraints in neurological disease

PLoS genetics, 2011-08, Vol.7 (8), p.e1002207-e1002207

2011

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An epigenomic roadmap to induced pluripotency reveals DNA methylation as a reprogramming modulator

Nature communications, 2014-12, Vol.5 (1), p.5619-5619, Article 5619

2014

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Single-Cell Gene Expression Profiles Define Self-Renewing, Pluripotent, and Lineage Primed States of Human Pluripotent Stem Cells

Stem cell reports, 2014-06, Vol.2 (6), p.881-895

2014

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An atypical role for the myeloid receptor Mincle in central nervous system injury

Journal of cerebral blood flow and metabolism, 2017-06, Vol.37 (6), p.2098-2111

2017

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Human CD141 + Dendritic Cell and CD1c + Dendritic Cell Undergo Concordant Early Genetic Programming after Activation in Humanized Mice In Vivo

Frontiers in immunology, 2017-10, Vol.8, p.1419-1419

2017

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Colony-Stimulating Factor-1 Promotes Kidney Growth and Repair via Alteration of Macrophage Responses

The American journal of pathology, 2011-09, Vol.179 (3), p.1243-1256

2011

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attract: A method for identifying core pathways that define cellular phenotypes

PloS one, 2011-10, Vol.6 (10), p.e25445-e25445

2011

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Defining an informativeness metric for clustering gene expression data

Bioinformatics, 2011-04, Vol.27 (8), p.1094-1100

2011

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Mincle polarizes human monocyte and neutrophil responses to Candida albicans

Immunology and cell biology, 2012-10, Vol.90 (9), p.889-895

2012

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NRF2 activation restores disease related metabolic deficiencies in olfactory neurosphere-derived cells from patients with sporadic Parkinson's disease

PloS one, 2011-07, Vol.6 (7), p.e21907-e21907

2011

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Ten simple rules for navigating the computational aspect of an interdisciplinary PhD

Toll-Like Receptors Drive Specific Patterns of Tolerance and Training on Restimulation of Macrophages

Age-specific biological and molecular profiling distinguishes paediatric from adult acute myeloid leukaemias

IsoVis – a webserver for visualization and annotation of alternative RNA isoforms

Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease

Transcriptional Profiling of Stem Cells: Moving from Descriptive to Predictive Paradigms

Defining the Role of Nuclear Factor (NF)-κB p105 Subunit in Human Macrophage by Transcriptomic Analysis of NFKB1 Knockout THP1 Cells

The Impact of APP on Alzheimer-like Pathogenesis and Gene Expression in Down Syndrome iPSC-Derived Neurons

Stemformatics: visualize and download curated stem cell data

Discovery of NRG1-VII: the myeloid-derived class of NRG1

Unique properties of a subset of human pluripotent stem cells with high capacity for self-renewal

A simple, scalable approach to building a cross-platform transcriptome atlas

The Macrophage-Inducible C-Type Lectin, Mincle, Is an Essential Component of the Innate Immune Response to Candida albicans

Mincle Activation and the Syk/Card9 Signaling Axis Are Central to the Development of Autoimmune Disease of the Eye

Australian researchers’ perceptions and experiences with stem cell registration

Variance of gene expression identifies altered network constraints in neurological disease

An epigenomic roadmap to induced pluripotency reveals DNA methylation as a reprogramming modulator

Single-Cell Gene Expression Profiles Define Self-Renewing, Pluripotent, and Lineage Primed States of Human Pluripotent Stem Cells

An atypical role for the myeloid receptor Mincle in central nervous system injury

Human CD141 + Dendritic Cell and CD1c + Dendritic Cell Undergo Concordant Early Genetic Programming after Activation in Humanized Mice In Vivo

Colony-Stimulating Factor-1 Promotes Kidney Growth and Repair via Alteration of Macrophage Responses

attract: A method for identifying core pathways that define cellular phenotypes

Defining an informativeness metric for clustering gene expression data

Mincle polarizes human monocyte and neutrophil responses to Candida albicans

NRF2 activation restores disease related metabolic deficiencies in olfactory neurosphere-derived cells from patients with sporadic Parkinson's disease

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