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Comparison of clustering methods for high‐dimensional single‐cell flow and mass cytometry data

Cytometry. Part A, 2016-12, Vol.89 (12), p.1084-1096

2016

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High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy

Nature medicine, 2018-02, Vol.24 (2), p.144-153

2018

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Essential guidelines for computational method benchmarking

Genome Biology, 2019-06, Vol.20 (1), p.125-125, Article 125

2019

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High-dimensional single-cell analysis reveals the immune signature of narcolepsy

The Journal of experimental medicine, 2016-11, Vol.213 (12), p.2621-2633

2016

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spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

BMC genomics, 2022-06, Vol.23 (1), p.434-434, Article 434

2022

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Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex

Nature neuroscience, 2021-03, Vol.24 (3), p.425-436

2021

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miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data

PLoS computational biology, 2021-08, Vol.17 (8), p.e1009290-e1009290

2021

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Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes

Development (Cambridge), 2016-06, Vol.143 (11), p.2025-2037

2016

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nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes

Nature communications, 2023-07, Vol.14 (1), p.4059-4059, Article 4059

2023

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CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets [version 2; peer review: 2 approved]

F1000 research, 2017, Vol.6, p.748

2017

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An updated guide for the perplexed: cytometry in the high-dimensional era

Nature immunology, 2021-10, Vol.22 (10), p.1190-1197

2021

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La0.6Sr0.4CoO3−δ Films Under Deoxygenation: Magnetic And Electronic Transitions Are Apart from The Structural Phase Transition

Advanced functional materials, 2024-06, Vol.34 (24), p.n/a

2024

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diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering

Communications biology, 2019-05, Vol.2 (1), p.183-183, Article 183

2019

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SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor

Bioinformatics, 2022-05, Vol.38 (11), p.3128-3131

2022

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Circulating neutrophil subsets in advanced lung cancer patients exhibit unique immune signature and relate to prognosis

The FASEB journal, 2020-03, Vol.34 (3), p.4204-4218

2020

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Performance of computational algorithms to deconvolve heterogeneous bulk ovarian tumor tissue depends on experimental factors

Genome Biology, 2023-10, Vol.24 (1), p.239-239, Article 239

2023

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Comparing trap and bait efficiency to record the great crested newts ( Triturus cristatus )

Knowledge and management of aquatic ecosystems, 2023 (424), p.26

2023

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The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics

eLife, 2024-01, Vol.12

2024

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Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design

Gigascience, 2021-09, Vol.10 (9)

2021

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HDCytoData: Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats [version 2; peer review: 2 approved]

F1000 research, 2019, Vol.8, p.1459-1459

2019

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Pulmonary Hypertension in Aortic and Mitral Valve Disease

Frontiers in cardiovascular medicine, 2018-05, Vol.5, p.40-40

2018

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Quantum Monte Carlo simulations in the trimer basis: first-order transitions and thermal critical points in frustrated trilayer magnets

SciPost physics, 2022-02, Vol.12 (2), p.054, Article 054

2022

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Emergent symmetries and coexisting orders in Dirac fermion systems

Physical review research, 2020-04, Vol.2 (2), Article 022005

2020

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Complement downregulation promotes an inflammatory signature that renders colorectal cancer susceptible to immunotherapy

Journal for immunotherapy of cancer, 2022-09, Vol.10 (9), p.e004717

2022

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CO2 and CH4 fluxes from inundated floodplain ponds: role of diel variability and duration of inundation

Frontiers in environmental science, 2023-07, Vol.11

2023

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Comparison of clustering methods for high‐dimensional single‐cell flow and mass cytometry data

High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy

Essential guidelines for computational method benchmarking

High-dimensional single-cell analysis reveals the immune signature of narcolepsy

spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex

miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data

Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes

nnSVG for the scalable identification of spatially variable genes using nearest-neighbor Gaussian processes

CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets [version 2; peer review: 2 approved]

An updated guide for the perplexed: cytometry in the high-dimensional era

La0.6Sr0.4CoO3−δ Films Under Deoxygenation: Magnetic And Electronic Transitions Are Apart from The Structural Phase Transition

diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering

SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor

Circulating neutrophil subsets in advanced lung cancer patients exhibit unique immune signature and relate to prognosis

Performance of computational algorithms to deconvolve heterogeneous bulk ovarian tumor tissue depends on experimental factors

Comparing trap and bait efficiency to record the great crested newts ( Triturus cristatus )

The gene expression landscape of the human locus coeruleus revealed by single-nucleus and spatially-resolved transcriptomics

Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design

HDCytoData: Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats [version 2; peer review: 2 approved]

Pulmonary Hypertension in Aortic and Mitral Valve Disease

Quantum Monte Carlo simulations in the trimer basis: first-order transitions and thermal critical points in frustrated trilayer magnets

Emergent symmetries and coexisting orders in Dirac fermion systems

Complement downregulation promotes an inflammatory signature that renders colorectal cancer susceptible to immunotherapy

CO2 and CH4 fluxes from inundated floodplain ponds: role of diel variability and duration of inundation

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