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Learning the High-Dimensional Immunogenomic Features That Predict Public and Private Antibody Repertoires

The Journal of immunology (1950), 2017-10, Vol.199 (8), p.2985-2997

2017

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Deep mutational learning predicts ACE2 binding and antibody escape to combinatorial mutations in the SARS-CoV-2 receptor-binding domain

Cell, 2022-10, Vol.185 (21), p.4008-4022.e14

2022

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Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune Repertoires

Frontiers in immunology, 2018-02, Vol.9, p.224-224

2018

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A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding

Cell reports (Cambridge), 2021-03, Vol.34 (11), p.108856-108856, Article 108856

2021

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Optimization of therapeutic antibodies by predicting antigen specificity from antibody sequence via deep learning

Nature biomedical engineering, 2021-06, Vol.5 (6), p.600

2021

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immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

Bioinformatics, 2020-06, Vol.36 (11), p.3594-3596

2020

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High-throughput T cell receptor engineering by functional screening identifies candidates with enhanced potency and specificity

Immunity (Cambridge, Mass.), 2022-10, Vol.55 (10), p.1953-1966.e10

2022

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In silico proof of principle of machine learning-based antibody design at unconstrained scale

mAbs, 2022, Vol.14 (1), p.2031482

2022

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A Single-Cell Atlas of Lymphocyte Adaptive Immune Repertoires and Transcriptomes Reveals Age-Related Differences in Convalescent COVID-19 Patients

Frontiers in immunology, 2021-07, Vol.12, p.701085-701085

2021

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SARS-CoV-2 reactive and neutralizing antibodies discovered by single-cell sequencing of plasma cells and mammalian display

Cell reports (Cambridge), 2022-01, Vol.38 (3), p.110242-110242, Article 110242

2022

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Reference-based comparison of adaptive immune receptor repertoires

Cell reports methods, 2022-08, Vol.2 (8), p.100269-100269, Article 100269

2022

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The Future of Blood Testing Is the Immunome

Frontiers in immunology, 2021-03, Vol.12, p.626793-626793

2021

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Complement C3 Inhibitor Pegcetacoplan for Geographic Atrophy Secondary to Age-Related Macular Degeneration: A Randomized Phase 2 Trial

Ophthalmology (Rochester, Minn.), 2020-02, Vol.127 (2), p.186-195

2020

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Incidence and geographical variation of amyotrophic lateral sclerosis (ALS) in Southern Germany--completeness of the ALS registry Swabia

PloS one, 2014-04, Vol.9 (4), p.e93932-e93932

2014

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Comparing Utilization and Costs of Care in Freestanding Emergency Departments, Hospital Emergency Departments, and Urgent Care Centers

Annals of emergency medicine, 2017-12, Vol.70 (6), p.846-857.e3

2017

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Comparison of deep learning architectures for colon cancer mutation detection

2023 IEEE 36th International Symposium on Computer-Based Medical Systems (CBMS), 2023, p.360-365

2023

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Unbiased average age-appropriate atlases for pediatric studies

NeuroImage (Orlando, Fla.), 2011-01, Vol.54 (1), p.313-327

2011

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Total and Regional Brain Volumes in a Population-Based Normative Sample from 4 to 18 Years: The NIH MRI Study of Normal Brain Development

Cerebral cortex (New York, N.Y. 1991), 2012-01, Vol.22 (1), p.1-12

2012

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Perspective on improving the quality of surface and material data analysis in the scientific literature with a focus on x-ray photoelectron spectroscopy (XPS)

Journal of vacuum science & technology. A, Vacuum, surfaces, and films, 2023-05, Vol.41 (3)

2023

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Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study

Journal of antimicrobial chemotherapy, 2015-12, Vol.70 (12), p.3323-3331

2015

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Anxious/depressed symptoms are linked to right ventromedial prefrontal cortical thickness maturation in healthy children and young adults

Cerebral cortex (New York, N.Y. 1991), 2014-11, Vol.24 (11), p.2941-2950

2014

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Exposure to bisphenol A in European women from 2007 to 2014 using human biomonitoring data – The European Joint Programme HBM4EU

Environment international, 2024-08, Vol.190, p.108912, Article 108912

2024

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Contribution of Kinematical and Thermal Full-field Measurements for Mechanical Properties Identification: Application to High Cycle Fatigue of Steels

Experimental mechanics, 2012-09, Vol.52 (7), p.743-756

2012

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Developmental changes in organization of structural brain networks

Cerebral cortex (New York, N.Y. 1991), 2013-09, Vol.23 (9), p.2072-2085

2013

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Learning the High-Dimensional Immunogenomic Features That Predict Public and Private Antibody Repertoires

Deep mutational learning predicts ACE2 binding and antibody escape to combinatorial mutations in the SARS-CoV-2 receptor-binding domain

Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune Repertoires

A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding

Optimization of therapeutic antibodies by predicting antigen specificity from antibody sequence via deep learning

immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

High-throughput T cell receptor engineering by functional screening identifies candidates with enhanced potency and specificity

In silico proof of principle of machine learning-based antibody design at unconstrained scale

A Single-Cell Atlas of Lymphocyte Adaptive Immune Repertoires and Transcriptomes Reveals Age-Related Differences in Convalescent COVID-19 Patients

SARS-CoV-2 reactive and neutralizing antibodies discovered by single-cell sequencing of plasma cells and mammalian display

Reference-based comparison of adaptive immune receptor repertoires

The Future of Blood Testing Is the Immunome

In silico proof of principle of machine learning-based antibody design at unconstrained scale

Complement C3 Inhibitor Pegcetacoplan for Geographic Atrophy Secondary to Age-Related Macular Degeneration: A Randomized Phase 2 Trial

Incidence and geographical variation of amyotrophic lateral sclerosis (ALS) in Southern Germany--completeness of the ALS registry Swabia

Comparing Utilization and Costs of Care in Freestanding Emergency Departments, Hospital Emergency Departments, and Urgent Care Centers

Comparison of deep learning architectures for colon cancer mutation detection

Unbiased average age-appropriate atlases for pediatric studies

Total and Regional Brain Volumes in a Population-Based Normative Sample from 4 to 18 Years: The NIH MRI Study of Normal Brain Development

Perspective on improving the quality of surface and material data analysis in the scientific literature with a focus on x-ray photoelectron spectroscopy (XPS)

Assessing efficacy of different nucleos(t)ide backbones in NNRTI-containing regimens in the Swiss HIV Cohort Study

Anxious/depressed symptoms are linked to right ventromedial prefrontal cortical thickness maturation in healthy children and young adults

Exposure to bisphenol A in European women from 2007 to 2014 using human biomonitoring data – The European Joint Programme HBM4EU

Contribution of Kinematical and Thermal Full-field Measurements for Mechanical Properties Identification: Application to High Cycle Fatigue of Steels

Developmental changes in organization of structural brain networks

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