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Comparing effects of attractive interactions in crowded systems: nonspecific, hydrophobic, and hydrogen bond interactions

PeerJ physical chemistry, 2024-01, Vol.6, p.e31, Article e31

2024

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Exploring Protein-Peptide Binding Specificity through Computational Peptide Screening

PLoS computational biology, 2013-10, Vol.9 (10), p.e1003277-e1003277

2013

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Simulations of a protein fold switch reveal crowding-induced population shifts driven by disordered regions

Communications chemistry, 2023-09, Vol.6 (1), p.191-191, Article 191

2023

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Binding of two intrinsically disordered peptides to a multi-specific protein: a combined Monte Carlo and molecular dynamics study

PLoS computational biology, 2012-09, Vol.8 (9), p.e1002682-e1002682

2012

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Direct numerical simulations of rotating turbulent channel flow

Journal of fluid mechanics, 2008-03, Vol.598, p.177-199

2008

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Binding free energy landscape of domain-peptide interactions

PLoS computational biology, 2011-08, Vol.7 (8), p.e1002131-e1002131

2011

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Laminarization mechanisms and extreme-amplitude states in rapidly rotating plane channel flow

Journal of fluid mechanics, 2013-09, Vol.730, p.193-219

2013

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Aggregate geometry in amyloid fibril nucleation

Physical review letters, 2013-01, Vol.110 (5), p.058101-058101, Article 058101

2013

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The C‐terminal domain of transcription factor RfaH: Folding, fold switching and energy landscape

Biopolymers, 2021-10, Vol.112 (10), p.e23420-n/a

2021

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Crowding-induced protein destabilization in the absence of soft attractions

Biophysical journal, 2022-07, Vol.121 (13), p.2503-2513

2022

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Theoretical and experimental demonstration of the importance of specific nonnative interactions in protein folding

Proceedings of the National Academy of Sciences - PNAS, 2008-07, Vol.105 (29), p.9999-10004

2008

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Effects of Topology and Sequence in Protein Folding Linked via Conformational Fluctuations

Biophysical journal, 2020-03, Vol.118 (6), p.1370-1380

2020

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Conformational and aggregation properties of the 1–93 fragment of apolipoprotein A‐I

Protein science, 2014-11, Vol.23 (11), p.1559-1571

2014

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Universality and diversity of folding mechanics for three-helix bundle proteins

Proceedings of the National Academy of Sciences - PNAS, 2008-01, Vol.105 (3), p.895-900

2008

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Binding Specificity Profiles from Computational Peptide Screening

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1561, p.201

Wallin, Stefan

2017

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Interplay between Native State Topology and Sequence in Two-State Protein Folding

Biophysical journal, 2019-02, Vol.116 (3), p.338a-338a

2019

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Taking large-eddy simulation of wall-bounded flows to higher Reynolds numbers by use of anisotropy-resolving subgrid models

Physical review fluids, 2017-03, Vol.2 (3), Article 034601

2017

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Structural fluctuations and mechanical stabilities of the metamorphic protein RfaH

Proteins, structure, function, and bioinformatics, 2021-03, Vol.89 (3), p.289-300

2021

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Evaluation and Parameterization of Round Vortex Generator Jet Experiments for Flow Control

AIAA journal, 2012-11, Vol.50 (11), p.2508-2524

2012

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Folding of a small helical protein using hydrogen bonds and hydrophobicity forces

Proteins, structure, function, and bioinformatics, 2002-05, Vol.47 (2), p.99-105

2002

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Intrinsically disordered proteins: structural and functional dynamics

Research and reports in biology, 2017-01, Vol.8, p.7-16

Wallin, Stefan

2017

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Folding, Fold Switching and Energy Landscape of Regulatory Protein RfaH

Biophysical journal, 2021-02, Vol.120 (3), p.8a-8a

2021

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Cooperativity, local-nonlocal coupling, and nonnative interactions: principles of protein folding from coarse-grained models

Annual review of physical chemistry, 2011-01, Vol.62 (1), p.301-326

2011

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Three-Helix-Bundle Protein in a Ramachandran Model

Proceedings of the National Academy of Sciences - PNAS, 2000-12, Vol.97 (25), p.13614-13618

2000

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Is Ficoll a Colloid or Polymer? A Multitechnique Study of a Prototypical Excluded-Volume Macromolecular Crowder

Macromolecules, 2022-10, Vol.55 (20), p.9103-9112

2022

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Comparing effects of attractive interactions in crowded systems: nonspecific, hydrophobic, and hydrogen bond interactions

Exploring Protein-Peptide Binding Specificity through Computational Peptide Screening

Simulations of a protein fold switch reveal crowding-induced population shifts driven by disordered regions

Binding of two intrinsically disordered peptides to a multi-specific protein: a combined Monte Carlo and molecular dynamics study

Direct numerical simulations of rotating turbulent channel flow

Binding free energy landscape of domain-peptide interactions

Laminarization mechanisms and extreme-amplitude states in rapidly rotating plane channel flow

Aggregate geometry in amyloid fibril nucleation

The C‐terminal domain of transcription factor RfaH: Folding, fold switching and energy landscape

Crowding-induced protein destabilization in the absence of soft attractions

Theoretical and experimental demonstration of the importance of specific nonnative interactions in protein folding

Effects of Topology and Sequence in Protein Folding Linked via Conformational Fluctuations

Conformational and aggregation properties of the 1–93 fragment of apolipoprotein A‐I

Universality and diversity of folding mechanics for three-helix bundle proteins

Binding Specificity Profiles from Computational Peptide Screening

Interplay between Native State Topology and Sequence in Two-State Protein Folding

Taking large-eddy simulation of wall-bounded flows to higher Reynolds numbers by use of anisotropy-resolving subgrid models

Structural fluctuations and mechanical stabilities of the metamorphic protein RfaH

Evaluation and Parameterization of Round Vortex Generator Jet Experiments for Flow Control

Folding of a small helical protein using hydrogen bonds and hydrophobicity forces

Intrinsically disordered proteins: structural and functional dynamics

Folding, Fold Switching and Energy Landscape of Regulatory Protein RfaH

Cooperativity, local-nonlocal coupling, and nonnative interactions: principles of protein folding from coarse-grained models

Three-Helix-Bundle Protein in a Ramachandran Model

Is Ficoll a Colloid or Polymer? A Multitechnique Study of a Prototypical Excluded-Volume Macromolecular Crowder

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