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Investigating the Role of TNF-α and IFN-γ Activation on the Dynamics of iNOS Gene Expression in LPS Stimulated Macrophages

PloS one, 2016-06, Vol.11 (6), p.e0153289-e0153289

2016

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Role of extracellular matrix and microenvironment in regulation of tumor growth and LAR-mediated invasion in glioblastoma

PloS one, 2018-10, Vol.13 (10), p.e0204865-e0204865

2018

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Antiviral capacity of the early CD8 T-cell response is predictive of natural control of SIV infection: Learning in vivo dynamics using ex vivo data

PLoS computational biology, 2024-09, Vol.20 (9), p.e1012434

2024

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Understanding patient-derived tumor organoid growth through an integrated imaging and mathematical modeling framework

PLoS computational biology, 2024-08, Vol.20 (8), p.e1012256

2024

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Spatial information allows inference of the prevalence of direct cell–to–cell viral infection

PLoS computational biology, 2024-07, Vol.20 (7), p.e1012264

2024

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Mathematical modeling of the evolution of resistance and aggressiveness of high-grade serous ovarian cancer from patient CA-125 time series

PLoS computational biology, 2024-05, Vol.20 (5), p.e1012073

2024

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Diverse mutant selection windows shape spatial heterogeneity in evolving populations

PLoS computational biology, 2024-02, Vol.20 (2), p.e1011878-e1011878

2024

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Synergistic epistasis among cancer drivers can rescue early tumors from the accumulation of deleterious passengers

PLoS computational biology, 2024-04, Vol.20 (4), p.e1012081-e1012081

2024

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Modeling resistance to the broadly neutralizing antibody PGT121 in people living with HIV-1

PLoS computational biology, 2024-03, Vol.20 (3), p.e1011518-e1011518

2024

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An analytically tractable, age-structured model of the impact of vector control on mosquito-transmitted infections

PLoS computational biology, 2024-03, Vol.20 (3), p.e1011440-e1011440

2024

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Eco-evolutionary agriculture: Host-pathogen dynamics in crop rotations

PLoS computational biology, 2020-01, Vol.16 (1), p.e1007546-e1007546

2020

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Fixation dynamics on hypergraphs

PLoS computational biology, 2023-09, Vol.19 (9), p.e1011494-e1011494

2023

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The role of memory in non-genetic inheritance and its impact on cancer treatment resistance

PLoS computational biology, 2021-08, Vol.17 (8), p.e1009348-e1009348

2021

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Estimating direct and spill-over impacts of political elections on COVID-19 transmission using synthetic control methods

PLoS computational biology, 2021-05, Vol.17 (5), p.e1008959-e1008959

2021

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Oncolytic potency and reduced virus tumor-specificity in oncolytic virotherapy. A mathematical modelling approach

PloS one, 2017-09, Vol.12 (9), p.e0184347-e0184347

2017

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Integrated computational and in vivo models reveal Key Insights into macrophage behavior during bone healing

PLoS computational biology, 2022-05, Vol.18 (5), p.e1009839-e1009839

2022

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Influence of confinement on the spreading of bacterial populations

PLoS computational biology, 2022-05, Vol.18 (5), p.e1010063-e1010063

2022

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The impact of phenotypic heterogeneity of tumour cells on treatment and relapse dynamics

PLoS computational biology, 2021-02, Vol.17 (2), p.e1008702-e1008702

2021

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A computational model tracks whole-lung Mycobacterium tuberculosis infection and predicts factors that inhibit dissemination

PLoS computational biology, 2020-05, Vol.16 (5), p.e1007280-e1007280

2020

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Shape-specific characterization of colorectal adenoma growth and transition to cancer with stochastic cell-based models

PLoS computational biology, 2023-01, Vol.19 (1), p.e1010831-e1010831

2023

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A multispecies framework for modeling adaptive immunity and immunotherapy in cancer

PLoS computational biology, 2023-04, Vol.19 (4), p.e1010976-e1010976

2023

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Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level

PLoS computational biology, 2021-01, Vol.17 (1), p.e1008446-e1008446

2021

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In vitro and in silico multidimensional modeling of oncolytic tumor virotherapy dynamics

PLoS computational biology, 2019-03, Vol.15 (3), p.e1006773-e1006773

2019

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Signatures of neutral evolution in exponentially growing tumors: A theoretical perspective

PLoS computational biology, 2021-02, Vol.17 (2), p.e1008701-e1008701

2021

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TNF-α inhibitor reduces drug-resistance to anti-PD-1: A mathematical model

PloS one, 2020-04, Vol.15 (4), p.e0231499-e0231499

2020

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Investigating the Role of TNF-α and IFN-γ Activation on the Dynamics of iNOS Gene Expression in LPS Stimulated Macrophages

Role of extracellular matrix and microenvironment in regulation of tumor growth and LAR-mediated invasion in glioblastoma

Antiviral capacity of the early CD8 T-cell response is predictive of natural control of SIV infection: Learning in vivo dynamics using ex vivo data

Understanding patient-derived tumor organoid growth through an integrated imaging and mathematical modeling framework

Spatial information allows inference of the prevalence of direct cell–to–cell viral infection

Mathematical modeling of the evolution of resistance and aggressiveness of high-grade serous ovarian cancer from patient CA-125 time series

Diverse mutant selection windows shape spatial heterogeneity in evolving populations

Synergistic epistasis among cancer drivers can rescue early tumors from the accumulation of deleterious passengers

Modeling resistance to the broadly neutralizing antibody PGT121 in people living with HIV-1

An analytically tractable, age-structured model of the impact of vector control on mosquito-transmitted infections

Eco-evolutionary agriculture: Host-pathogen dynamics in crop rotations

Fixation dynamics on hypergraphs

The role of memory in non-genetic inheritance and its impact on cancer treatment resistance

Estimating direct and spill-over impacts of political elections on COVID-19 transmission using synthetic control methods

Oncolytic potency and reduced virus tumor-specificity in oncolytic virotherapy. A mathematical modelling approach

Integrated computational and in vivo models reveal Key Insights into macrophage behavior during bone healing

Influence of confinement on the spreading of bacterial populations

The impact of phenotypic heterogeneity of tumour cells on treatment and relapse dynamics

A computational model tracks whole-lung Mycobacterium tuberculosis infection and predicts factors that inhibit dissemination

Shape-specific characterization of colorectal adenoma growth and transition to cancer with stochastic cell-based models

A multispecies framework for modeling adaptive immunity and immunotherapy in cancer

Identifying the drivers of multidrug-resistant Klebsiella pneumoniae at a European level

In vitro and in silico multidimensional modeling of oncolytic tumor virotherapy dynamics

Signatures of neutral evolution in exponentially growing tumors: A theoretical perspective

TNF-α inhibitor reduces drug-resistance to anti-PD-1: A mathematical model

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