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Quantitative Aspect of Bacillus subtilis σ B Regulatory Network on a Proteome Level-A Computational Simulation

Biology (Basel, Switzerland), 2024-08, Vol.13 (8), p.614

Vohradsky, Jiri

2024

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Quantitative Aspect of Bacillus subtilis σB Regulatory Network-A Computational Simulation

Biology (Basel, Switzerland), 2022-11, Vol.11 (12), p.1729

Vohradsky, Jiri

2022

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rboAnalyzer webserver: web service for non-coding RNA characterization from NCBI BLAST output

Bioinformatics (Oxford, England), 2021-09, Vol.37 (17), p.2755-2756

2021

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Whole proteome analysis of germinating and outgrowing Bacillus subtilis 168

Proteomics (Weinheim), 2024-09, Vol.24 (17), p.e2400031-n/a

2024

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Genexpi: a toolset for identifying regulons and validating gene regulatory networks using time-course expression data

BMC bioinformatics, 2018-04, Vol.19 (1), p.137-137, Article 137

Modrak, Martin

2018

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A Comparison of Protein and mRNA Expression during Development of the Soil Dwelling Prokaryote (S. coelicolor)

Proteomics (Weinheim), 2020-07, Vol.20 (14), p.e2000032-n/a

2020

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Neural Model of the Genetic Network

The Journal of biological chemistry, 2001-09, Vol.276 (39), p.36168-36173

Vohradsky, Jiri

2001

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Quantitative Aspect of Bacillus subtilis σ[sup.B] Regulatory Network on a Proteome Level—A Computational Simulation

Biology (Basel, Switzerland), 2024-08, Vol.13 (8)

Vohradsky, Jiri

2024

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rboAnalyzer: A Software to Improve Characterization of Non-coding RNAs From Sequence Database Search Output

Frontiers in genetics, 2020-07, Vol.11, p.675-675

2020

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Global features of gene expression on the proteome and transcriptome levels in S. coelicolor during germination

PloS one, 2013-09, Vol.8 (9), p.e72842-e72842

2013

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Lambda phage genetic switch as a system with critical behaviour

Journal of theoretical biology, 2017-10, Vol.431, p.32-38

Vohradsky, Jiri

2017

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Virtual mutagenesis of the yeast cyclins genetic network reveals complex dynamics of transcriptional control networks

PloS one, 2011-04, Vol.6 (4), p.e18827

2011

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Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR [version 2; peer review: 2 approved]

F1000 research, 2022-08, Vol.10, p.1238

2022

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Kinetic Modeling and Meta-Analysis of the Bacillus subtilis SigB Regulon during Spore Germination and Outgrowth

Microorganisms (Basel), 2021-01, Vol.9 (1), p.112

2021

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Stochastic simulation for the inference of transcriptional control network of yeast cyclins genes

Nucleic acids research, 2012-08, Vol.40 (15), p.7096-7103

Vohradsky, Jiri

2012

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A parallel genetic algorithm for single class pattern classification and its application for gene expression profiling in Streptomyces coelicolor

BMC genomics, 2007-02, Vol.8 (1), p.49-49, Article 49

2007

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Proteomic Analysis of the Bacterial Cell Cycle

Proceedings of the National Academy of Sciences - PNAS, 2001-04, Vol.98 (8), p.4681-4686

2001

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Supervised inference of gene-regulatory networks

BMC bioinformatics, 2008-01, Vol.9 (1), p.2-2, Article 2

2008

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DNA mapping and kinetic modeling of the HrdB regulon in Streptomyces coelicolor

Nucleic acids research, 2019-01, Vol.47 (2), p.621-633

2019

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Nonlinear differential equation model for quantification of transcriptional regulation applied to microarray data of Saccharomyces cerevisiae

Nucleic acids research, 2007-01, Vol.35 (1), p.279-287

2007

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Changes in activity of metabolic and regulatory pathways during germination of S. coelicolor

BMC genomics, 2014-12, Vol.15 (1), p.1173-1173, Article 1173

2014

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Inference of sigma factor controlled networks by using numerical modeling applied to microarray time series data of the germinating prokaryote

Nucleic acids research, 2014-01, Vol.42 (2), p.748-763

2014

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Numerical modelling of microRNA-mediated mRNA decay identifies novel mechanism of microRNA controlled mRNA downregulation

Nucleic acids research, 2010-08, Vol.38 (14), p.4579-4585

2010

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Neural network model of gene expression

The FASEB journal, 2001-03, Vol.15 (3), p.846-854

VOHRADSKY, JIŘÍ

2001

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Quantitative Aspect of Bacillus subtilis σ B Regulatory Network on a Proteome Level-A Computational Simulation

Quantitative Aspect of Bacillus subtilis σB Regulatory Network-A Computational Simulation

rboAnalyzer webserver: web service for non-coding RNA characterization from NCBI BLAST output

Whole proteome analysis of germinating and outgrowing Bacillus subtilis 168

Genexpi: a toolset for identifying regulons and validating gene regulatory networks using time-course expression data

A Comparison of Protein and mRNA Expression during Development of the Soil Dwelling Prokaryote (S. coelicolor)

Neural Model of the Genetic Network

Quantitative Aspect of Bacillus subtilis σ[sup.B] Regulatory Network on a Proteome Level—A Computational Simulation

rboAnalyzer: A Software to Improve Characterization of Non-coding RNAs From Sequence Database Search Output

Global features of gene expression on the proteome and transcriptome levels in S. coelicolor during germination

Lambda phage genetic switch as a system with critical behaviour

Virtual mutagenesis of the yeast cyclins genetic network reveals complex dynamics of transcriptional control networks

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR [version 2; peer review: 2 approved]

Kinetic Modeling and Meta-Analysis of the Bacillus subtilis SigB Regulon during Spore Germination and Outgrowth

Stochastic simulation for the inference of transcriptional control network of yeast cyclins genes

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR [version 1; peer review: 1 approved, 1 approved with reservations]

A parallel genetic algorithm for single class pattern classification and its application for gene expression profiling in Streptomyces coelicolor

Proteomic Analysis of the Bacterial Cell Cycle

Supervised inference of gene-regulatory networks

DNA mapping and kinetic modeling of the HrdB regulon in Streptomyces coelicolor

Nonlinear differential equation model for quantification of transcriptional regulation applied to microarray data of Saccharomyces cerevisiae

Changes in activity of metabolic and regulatory pathways during germination of S. coelicolor

Inference of sigma factor controlled networks by using numerical modeling applied to microarray time series data of the germinating prokaryote

Numerical modelling of microRNA-mediated mRNA decay identifies novel mechanism of microRNA controlled mRNA downregulation

Neural network model of gene expression

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