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The Landscape of Isoform Switches in Human Cancers

Molecular cancer research, 2017-09, Vol.15 (9), p.1206-1220

2017

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Astrogliogenesis in human fetal brain: complex spatiotemporal immunoreactivity patterns of GFAP, S100, AQP4 and YKL‐40

Journal of anatomy, 2019-09, Vol.235 (3), p.590-615

2019

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The HOPX and BLBP landscape and gliogenic regions in developing human brain

Journal of anatomy, 2023-07, Vol.243 (1), p.23-38

2023

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IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns of alternative splicing and its functional consequences

Bioinformatics, 2019-11, Vol.35 (21), p.4469-4471

2019

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Targeting glioma stem‐like cell survival and chemoresistance through inhibition of lysine‐specific histone demethylase KDM2B

Molecular oncology, 2018-03, Vol.12 (3), p.406-420

2018

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Building flexible and robust analysis frameworks for molecular subtyping of cancers

Molecular oncology, 2024-03, Vol.18 (3), p.606-619

2024

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UBL5 is essential for pre-mRNA splicing and sister chromatid cohesion in human cells

EMBO reports, 2014-09, Vol.15 (9), p.956-964

2014

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satuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications [version 2; peer review: 2 approved]

F1000 research, 2022, Vol.10, p.374-374

2022

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Identification of a Nuclear Exosome Decay Pathway for Processed Transcripts

Molecular cell, 2016-11, Vol.64 (3), p.520-533

2016

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CAGEfightR: analysis of 5'-end data using R/Bioconductor

BMC bioinformatics, 2019-10, Vol.20 (1), p.487-487, Article 487

2019

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spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data

BMC bioinformatics, 2014-03, Vol.15 (1), p.81-81, Article 81

2014

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Loss-of-function variants in ADCY3 increase risk of obesity and type 2 diabetes

Nature genetics, 2018-02, Vol.50 (2), p.172-174

2018

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UPF2-Dependent Nonsense-Mediated mRNA Decay Pathway Is Essential for Spermatogenesis by Selectively Eliminating Longer 3'UTR Transcripts

PLoS genetics, 2016-05, Vol.12 (5), p.e1005863-e1005863

2016

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Expression and splicing mediate distinct biological signals

BMC biology, 2023-10, Vol.21 (1), p.1-220, Article 220

2023

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Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies

Nature communications, 2018-04, Vol.9 (1), p.1661-19, Article 1661

2018

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A Functional Link between Nuclear RNA Decay and Transcriptional Control Mediated by the Polycomb Repressive Complex 2

Cell reports (Cambridge), 2019-11, Vol.29 (7), p.1800-1811.e6

2019

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UBL5 is essential for pre-mRNA splicing and sister chromatid cohesion in human cells

EMBO reports, 2014-12, Vol.15 (12), p.1330-1330

2014

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Editorial: Alternative Splicing in Health and Disease

Frontiers in molecular biosciences, 2022-04, Vol.9, p.878668-878668

2022

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Transcriptional changes induced by bevacizumab combination therapy in responding and non-responding recurrent glioblastoma patients

BMC cancer, 2017-04, Vol.17 (1), p.278-278, Article 278

2017

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Personalized B cell response to the Lactobacillus rhamnosus GG probiotic in healthy human subjects: a randomized trial

Gut microbes, 2020-11, Vol.12 (1), p.1-14

2020

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Amplification of pico-scale DNA mediated by bacterial carrier DNA for small-cell-number transcription factor ChIP-seq

BMC genomics, 2015-02, Vol.16 (1), p.46-46, Article 46

2015

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Targeting glioma stem‐like cell survival and chemoresistance through inhibition of lysine‐specific histone demethylase KDM 2B

Molecular oncology, 2018-03, Vol.12 (3), p.406-420

2018

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Most protein domains exist as variants with distinct functions across cells, tissues and diseases

NAR genomics and bioinformatics, 2023-09, Vol.5 (3)

Vitting-Seerup, Kristoffer

2023

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Transcriptional dynamics reveal critical roles for non-coding RNAs in the immediate-early response

PLoS computational biology, 2015-04, Vol.11 (4), p.e1004217-e1004217

2015

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The RNA m6A Reader YTHDF2 Maintains Oncogene Expression and Is a Targetable Dependency in Glioblastoma Stem Cells

Cancer discovery, 2021-02, Vol.11 (2), p.480-499

2021

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The Landscape of Isoform Switches in Human Cancers

Astrogliogenesis in human fetal brain: complex spatiotemporal immunoreactivity patterns of GFAP, S100, AQP4 and YKL‐40

The HOPX and BLBP landscape and gliogenic regions in developing human brain

IsoformSwitchAnalyzeR: analysis of changes in genome-wide patterns of alternative splicing and its functional consequences

Targeting glioma stem‐like cell survival and chemoresistance through inhibition of lysine‐specific histone demethylase KDM2B

Building flexible and robust analysis frameworks for molecular subtyping of cancers

UBL5 is essential for pre-mRNA splicing and sister chromatid cohesion in human cells

satuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications [version 2; peer review: 2 approved]

Identification of a Nuclear Exosome Decay Pathway for Processed Transcripts

CAGEfightR: analysis of 5'-end data using R/Bioconductor

spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data

Loss-of-function variants in ADCY3 increase risk of obesity and type 2 diabetes

UPF2-Dependent Nonsense-Mediated mRNA Decay Pathway Is Essential for Spermatogenesis by Selectively Eliminating Longer 3'UTR Transcripts

Expression and splicing mediate distinct biological signals

Characterization of the enhancer and promoter landscape of inflammatory bowel disease from human colon biopsies

A Functional Link between Nuclear RNA Decay and Transcriptional Control Mediated by the Polycomb Repressive Complex 2

UBL5 is essential for pre-mRNA splicing and sister chromatid cohesion in human cells

Editorial: Alternative Splicing in Health and Disease

Transcriptional changes induced by bevacizumab combination therapy in responding and non-responding recurrent glioblastoma patients

Personalized B cell response to the Lactobacillus rhamnosus GG probiotic in healthy human subjects: a randomized trial

Amplification of pico-scale DNA mediated by bacterial carrier DNA for small-cell-number transcription factor ChIP-seq

Targeting glioma stem‐like cell survival and chemoresistance through inhibition of lysine‐specific histone demethylase KDM 2B

Most protein domains exist as variants with distinct functions across cells, tissues and diseases

Transcriptional dynamics reveal critical roles for non-coding RNAs in the immediate-early response

The RNA m6A Reader YTHDF2 Maintains Oncogene Expression and Is a Targetable Dependency in Glioblastoma Stem Cells

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