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Gene expression variability: the other dimension in transcriptome analysis

Physiological genomics, 2019-05, Vol.51 (5), p.145-158

2019

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Estimates of gene ensemble noise highlight critical pathways and predict disease severity in H1N1, COVID-19 and mortality in sepsis patients

Scientific reports, 2021-05, Vol.11 (1), p.10793-10793, Article 10793

2021

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The ‘un-shrunk’ partial correlation in Gaussian graphical models

BMC bioinformatics, 2021-09, Vol.22 (1), p.1-424, Article 424

2021

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BLM helicase suppresses recombination at G-quadruplex motifs in transcribed genes

Nature communications, 2018-01, Vol.9 (1), p.271-12, Article 271

2018

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Whole genome sequencing of nearly isogenic WMI and WLI inbred rats identifies genes potentially involved in depression and stress reactivity

Scientific reports, 2021-07, Vol.11 (1), p.14774-11, Article 14774

2021

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Characterizing polymorphic inversions in human genomes by single-cell sequencing

Genome research, 2016-11, Vol.26 (11), p.1575

2016

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Dense and accurate whole-chromosome haplotyping of individual genomes

Nature communications, 2017-11, Vol.8 (1), p.1293-10, Article 1293

2017

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Resilience to aging in the regeneration‐capable flatworm Macrostomum lignano

Aging cell, 2018-06, Vol.17 (3), p.e12739-n/a

2018

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Phylogenetic Shadowing and Computational Identification of Human microRNA Genes

Cell, 2005-01, Vol.120 (1), p.21-24

2005

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Transcription Factor Achaete Scute-Like 2 Controls Intestinal Stem Cell Fate

Cell, 2009-03, Vol.136 (5), p.903-912

2009

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Protein biogenesis machinery is a driver of replicative aging in yeast

eLife, 2015-12, Vol.4, p.e08527-e08527

2015

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Whole-genome sequencing of 1,171 elderly admixed individuals from São Paulo, Brazil

Nature communications, 2022-03, Vol.13 (1), p.1004-1004

2022

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Chromothripsis as a mechanism driving complex de novo structural rearrangements in the germline

Human molecular genetics, 2011-05, Vol.20 (10), p.1916-1924

2011

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Sister chromatid exchanges induced by perturbed replication can form independently of BRCA1, BRCA2 and RAD51

Nature communications, 2022-11, Vol.13 (1), p.6722-6722, Article 6722

2022

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Genome-wide mapping of sister chromatid exchange events in single yeast cells using Strand-seq

eLife, 2017-12, Vol.6

2017

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Mutagenic Capacity of Endogenous G4 DNA Underlies Genome Instability in FANCJ-Defective C. elegans

Current biology, 2008-06, Vol.18 (12), p.900-905

2008

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Efficient transgenesis and annotated genome sequence of the regenerative flatworm model Macrostomum lignano

Nature communications, 2017-12, Vol.8 (1), p.2120-12, Article 2120

2017

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FastCAR: fast correction for ambient RNA to facilitate differential gene expression analysis in single-cell RNA-sequencing datasets

BMC genomics, 2023-11, Vol.24 (1), p.1-722, Article 722

2023

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Construction of Whole Genomes from Scaffolds Using Single Cell Strand-Seq Data

International journal of molecular sciences, 2021-03, Vol.22 (7), p.3617

2021

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A Novel Role for Bronchial MicroRNAs and Long Noncoding RNAs in Asthma Remission

American journal of respiratory and critical care medicine, 2020-08, Vol.202 (4), p.614-618

2020

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Smoking increases expression of the SARS-CoV-2 spike protein-binding long ACE2 isoform in bronchial epithelium

Respiratory research, 2023-05, Vol.24 (1), p.130-130, Article 130

2023

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Gene network approach reveals co-expression patterns in nasal and bronchial epithelium

Scientific reports, 2019-11, Vol.9 (1), p.15835-13, Article 15835

2019

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Variant calling: Considerations, practices, and developments

Human mutation, 2022-08, Vol.43 (8), p.976-985

2022

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C/EBPβ isoform-specific regulation of migration and invasion in triple-negative breast cancer cells

NPJ breast cancer, 2022-01, Vol.8 (1), p.11-11, Article 11

2022

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Gene expression variability: the other dimension in transcriptome analysis

Estimates of gene ensemble noise highlight critical pathways and predict disease severity in H1N1, COVID-19 and mortality in sepsis patients

The ‘un-shrunk’ partial correlation in Gaussian graphical models

BLM helicase suppresses recombination at G-quadruplex motifs in transcribed genes

Whole genome sequencing of nearly isogenic WMI and WLI inbred rats identifies genes potentially involved in depression and stress reactivity

Characterizing polymorphic inversions in human genomes by single-cell sequencing

Dense and accurate whole-chromosome haplotyping of individual genomes

Resilience to aging in the regeneration‐capable flatworm Macrostomum lignano

Phylogenetic Shadowing and Computational Identification of Human microRNA Genes

Transcription Factor Achaete Scute-Like 2 Controls Intestinal Stem Cell Fate

Protein biogenesis machinery is a driver of replicative aging in yeast

Whole-genome sequencing of 1,171 elderly admixed individuals from São Paulo, Brazil

Chromothripsis as a mechanism driving complex de novo structural rearrangements in the germline

Sister chromatid exchanges induced by perturbed replication can form independently of BRCA1, BRCA2 and RAD51

Characteristics of de novo structural changes in the human genome

Genome-wide mapping of sister chromatid exchange events in single yeast cells using Strand-seq

Mutagenic Capacity of Endogenous G4 DNA Underlies Genome Instability in FANCJ-Defective C. elegans

Efficient transgenesis and annotated genome sequence of the regenerative flatworm model Macrostomum lignano

FastCAR: fast correction for ambient RNA to facilitate differential gene expression analysis in single-cell RNA-sequencing datasets

Construction of Whole Genomes from Scaffolds Using Single Cell Strand-Seq Data

A Novel Role for Bronchial MicroRNAs and Long Noncoding RNAs in Asthma Remission

Smoking increases expression of the SARS-CoV-2 spike protein-binding long ACE2 isoform in bronchial epithelium

Gene network approach reveals co-expression patterns in nasal and bronchial epithelium

Variant calling: Considerations, practices, and developments

C/EBPβ isoform-specific regulation of migration and invasion in triple-negative breast cancer cells

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