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COG database update: focus on microbial diversity, model organisms, and widespread pathogens

Nucleic acids research, 2021-01, Vol.49 (D1), p.D274

2021

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TPMCalculator: one-step software to quantify mRNA abundance of genomic features

Bioinformatics (Oxford, England), 2019-06, Vol.35 (11), p.1960-1962

2019

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ElasticBLAST: accelerating sequence search via cloud computing

BMC bioinformatics, 2023-03, Vol.24 (1), p.117-117, Article 117

2023

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BioContainers: an open-source and community-driven framework for software standardization

Bioinformatics (Oxford, England), 2017-08, Vol.33 (16), p.2580-2582

2017

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LitSense: making sense of biomedical literature at sentence level

Nucleic acids research, 2019-07, Vol.47 (W1), p.W594

2019

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Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006

BMC genomics, 2019-05, Vol.20 (1), p.378-378, Article 378

2019

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Nonessential Ribosomal Proteins in Bacteria and Archaea Identified Using Clusters of Orthologous Genes

Journal of bacteriology, 2021-05, Vol.203 (11)

2021

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BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers

Journal of proteome research, 2021-04, Vol.20 (4), p.2056-2061

2021

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PM4NGS, a project management framework for next-generation sequencing data analysis

Gigascience, 2021-01, Vol.10 (1)

2021

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GTax: improving de novo transcriptome assembly by removing foreign RNA contamination

Genome Biology, 2024-01, Vol.25 (1), p.12-21, Article 12

2024

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Aberrant spliceosome activity via elevated intron retention and upregulation and phosphorylation of SF3B1 in chronic lymphocytic leukemia

Molecular therapy. Nucleic acids, 2024-06, Vol.35 (2), p.102202, Article 102202

2024

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Conservation and Evolution of the Sporulation Gene Set in Diverse Members of the Firmicutes

Journal of bacteriology, 2022-06, Vol.204 (6), p.e0007922-e0007922

2022

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MutaBind2: Predicting the Impacts of Single and Multiple Mutations on Protein-Protein Interactions

iScience, 2020-03, Vol.23 (3), p.100939-100939, Article 100939

2020

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Workflow and web application for annotating NCBI BioProject transcriptome data

Database : the journal of biological databases and curation, 2017, Vol.2017

2017

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Transcriptome annotation in the cloud: complexity, best practices, and cost

Gigascience, 2021-01, Vol.10 (2)

2021

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Census of solo LuxR genes in prokaryotic genomes

Frontiers in cellular and infection microbiology, 2015-03, Vol.5, p.20-20

2015

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BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks

Epigenetics & chromatin, 2020-04, Vol.13 (1), p.21-21, Article 21

2020

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SNPDelScore: combining multiple methods to score deleterious effects of noncoding mutations in the human genome

Bioinformatics, 2018-01, Vol.34 (2), p.289-291

2018

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Quantifying deleterious effects of regulatory variants

Nucleic acids research, 2017-03, Vol.45 (5), p.2307

2017

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Non-essential ribosomal proteins in bacteria and archaea identified using COGs

Journal of bacteriology, 2021-06, Vol.203 (11)

2021

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Low cytomegalovirus seroprevalence in early multiple sclerosis: a case for the ‘hygiene hypothesis’?

European journal of neurology, 2018-07, Vol.25 (7), p.925-933

2018

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Adaptive natural killer cell response to cytomegalovirus and disability progression in multiple sclerosis

Multiple sclerosis, 2016-05, Vol.22 (6), p.741-752

2016

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Dulaglutide and renal outcomes in type 2 diabetes: an exploratory analysis of the REWIND randomised, placebo-controlled trial

The Lancet (British edition), 2019-07, Vol.394 (10193), p.131-138

2019

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Combination of late gadolinium enhancement and genotype improves prediction of prognosis in non‐ischaemic dilated cardiomyopathy

European journal of heart failure, 2022-07, Vol.24 (7), p.1183-1196

2022

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COG database update: focus on microbial diversity, model organisms, and widespread pathogens

TPMCalculator: one-step software to quantify mRNA abundance of genomic features

ElasticBLAST: accelerating sequence search via cloud computing

BioContainers: an open-source and community-driven framework for software standardization

LitSense: making sense of biomedical literature at sentence level

Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006

Nonessential Ribosomal Proteins in Bacteria and Archaea Identified Using Clusters of Orthologous Genes

BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers

PM4NGS, a project management framework for next-generation sequencing data analysis

GTax: improving de novo transcriptome assembly by removing foreign RNA contamination

Aberrant spliceosome activity via elevated intron retention and upregulation and phosphorylation of SF3B1 in chronic lymphocytic leukemia

Conservation and Evolution of the Sporulation Gene Set in Diverse Members of the Firmicutes

MutaBind2: Predicting the Impacts of Single and Multiple Mutations on Protein-Protein Interactions

Workflow and web application for annotating NCBI BioProject transcriptome data

Transcriptome annotation in the cloud: complexity, best practices, and cost

Census of solo LuxR genes in prokaryotic genomes

BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks

SNPDelScore: combining multiple methods to score deleterious effects of noncoding mutations in the human genome

Quantifying deleterious effects of regulatory variants

Non-essential ribosomal proteins in bacteria and archaea identified using COGs

Low cytomegalovirus seroprevalence in early multiple sclerosis: a case for the ‘hygiene hypothesis’?

Improving childhood cancer care in Latin America and the Caribbean: a PAHO Childhood Cancer Working Group position statement

Adaptive natural killer cell response to cytomegalovirus and disability progression in multiple sclerosis

Dulaglutide and renal outcomes in type 2 diabetes: an exploratory analysis of the REWIND randomised, placebo-controlled trial

Combination of late gadolinium enhancement and genotype improves prediction of prognosis in non‐ischaemic dilated cardiomyopathy

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