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Evolution of the mammalian transcription factor binding repertoire via transposable elements

Genome Research, 2008-11, Vol.18 (11), p.1752-1762

2008

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An Expression Signature for p53 Status in Human Breast Cancer Predicts Mutation Status, Transcriptional Effects, and Patient Survival

Proceedings of the National Academy of Sciences - PNAS, 2005-09, Vol.102 (38), p.13550-13555

2005

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The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

Nature genetics, 2006-04, Vol.38 (4), p.431-440

2006

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A Global Map of p53 Transcription-Factor Binding Sites in the Human Genome

Cell, 2006-01, Vol.124 (1), p.207-219

2006

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Whole-genome cartography of estrogen receptor alpha binding sites

PLoS genetics, 2007-06, Vol.3 (6), p.e87-e87

2007

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Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression

Nature biotechnology, 2006-01, Vol.24 (1), p.73-75

2006

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Zebrafish whole-adult-organism chemogenomics for large-scale predictive and discovery chemical biology

PLoS genetics, 2008-07, Vol.4 (7), p.e1000121-e1000121

2008

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Inherent signals in sequencing-based Chromatin-ImmunoPrecipitation control libraries

PloS one, 2009-04, Vol.4 (4), p.e5241-e5241

2009

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Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells

Cell, 2008-06, Vol.133 (6), p.1106-1117

2008

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Reprogramming of fibroblasts into induced pluripotent stem cells with orphan nuclear receptor Esrrb

Nature cell biology, 2009-02, Vol.11 (2), p.197-203

2009

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Laboratory-Acquired Severe Acute Respiratory Syndrome

The New England journal of medicine, 2004-04, Vol.350 (17), p.1740-1745

2004

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Identification of discriminators of hepatoma by gene expression profiling using a minimal dataset approach

Hepatology (Baltimore, Md.), 2004-04, Vol.39 (4), p.944-953

2004

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Tracking the evolution of the SARS coronavirus using high-throughput, high-density resequencing arrays

Genome research, 2004-03, Vol.14 (3), p.398

2004

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De-Novo Identification of PPARγ/RXR Binding Sites and Direct Targets during Adipogenesis

PloS one, 2009-03, Vol.4 (3), p.e4907

2009

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A human in vitro model system for investigating genome-wide host responses to SARS coronavirus infection

BMC infectious diseases, 2004-09, Vol.4 (1), p.34-34, Article 34

2004

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Mutational dynamics of the SARS coronavirus in cell culture and human populations isolated in 2003

BMC infectious diseases, 2004-09, Vol.4 (1), p.32-32, Article 32

2004

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Gene expression preferentially regulated by tamoxifen in breast cancer cells and correlations with clinical outcome

Cancer research (Chicago, Ill.), 2006-07, Vol.66 (14), p.7334-7340

2006

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Comment on " 'Stemness': transcriptional profiling of embryonic and adult stem cells" and "a stem cell molecular signature"

Science (American Association for the Advancement of Science), 2003-10, Vol.302 (5644), p.393; author reply 393-393; author reply 393

2003

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Genome-wide expression profiling; a panel of mouse tissues discloses novel biological functions of liver X receptors in adrenals

Journal of molecular endocrinology, 2004-12, Vol.33 (3), p.609-622

2004

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Inhibitory effects of estrogen receptor beta on specific hormone-responsive gene expression and association with disease outcome in primary breast cancer

Breast cancer research : BCR, 2007-01, Vol.9 (2), p.R25-R25, Article R25

2007

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Comment on " 'Stemness': transcriptional profiling of embryonic and adult stem cells" and "a stem cell molecular signature"

Science (American Association for the Advancement of Science), 2003-10, Vol.302 (5644), p.393; author reply 393-393

2003

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Inferring Direct Regulatory Targets of a Transcription Factor in the DREAM2 Challenge

Annals of the New York Academy of Sciences, 2009-03, Vol.1158 (1), p.215-223

2009

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De-novo identification of PPARgamma/RXR binding sites and direct targets during adipogenesis

PloS one, 2009, Vol.4 (3), p.e4907-e4907

2009

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BEARR: Batch Extraction and Analysis of cis-Regulatory Regions

Nucleic acids research, 2004-07, Vol.32 (Web Server issue), p.W257

2004

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Evolution of the mammalian transcription factor binding repertoire via transposable elements

An Expression Signature for p53 Status in Human Breast Cancer Predicts Mutation Status, Transcriptional Effects, and Patient Survival

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

A Global Map of p53 Transcription-Factor Binding Sites in the Human Genome

Whole-genome cartography of estrogen receptor alpha binding sites

Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression

Zebrafish whole-adult-organism chemogenomics for large-scale predictive and discovery chemical biology

Inherent signals in sequencing-based Chromatin-ImmunoPrecipitation control libraries

Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells

Reprogramming of fibroblasts into induced pluripotent stem cells with orphan nuclear receptor Esrrb

Laboratory-Acquired Severe Acute Respiratory Syndrome

Identification of discriminators of hepatoma by gene expression profiling using a minimal dataset approach

An oestrogen-receptor-alpha-bound human chromatin interactome

Tracking the evolution of the SARS coronavirus using high-throughput, high-density resequencing arrays

De-Novo Identification of PPARγ/RXR Binding Sites and Direct Targets during Adipogenesis

A human in vitro model system for investigating genome-wide host responses to SARS coronavirus infection

Mutational dynamics of the SARS coronavirus in cell culture and human populations isolated in 2003

Gene expression preferentially regulated by tamoxifen in breast cancer cells and correlations with clinical outcome

Comment on " 'Stemness': transcriptional profiling of embryonic and adult stem cells" and "a stem cell molecular signature"

Genome-wide expression profiling; a panel of mouse tissues discloses novel biological functions of liver X receptors in adrenals

Inhibitory effects of estrogen receptor beta on specific hormone-responsive gene expression and association with disease outcome in primary breast cancer

Comment on " 'Stemness': transcriptional profiling of embryonic and adult stem cells" and "a stem cell molecular signature"

Inferring Direct Regulatory Targets of a Transcription Factor in the DREAM2 Challenge

De-novo identification of PPARgamma/RXR binding sites and direct targets during adipogenesis

BEARR: Batch Extraction and Analysis of cis-Regulatory Regions

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