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Modification of messenger RNA by 2'-O-methylation regulates gene expression in vivo

Nature communications, 2019-07, Vol.10 (1), p.3401-9, Article 3401

2019

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The unusual structural properties and potential biological relevance of switchback DNA

Nature communications, 2024-08, Vol.15 (1), p.6636-15, Article 6636

2024

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Celebrating wobble decoding: Half a century and still much is new

RNA biology, 2018-05, Vol.15 (4-5), p.537-553

2018

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High-throughput single-molecule quantification of individual base stacking energies in nucleic acids

Nature communications, 2023-02, Vol.14 (1), p.631-631, Article 631

2023

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Structural and Binding Effects of Chemical Modifications on Thrombin Binding Aptamer (TBA)

Molecules (Basel, Switzerland), 2021-07, Vol.26 (15), p.4620

2021

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Structural effects of inosine substitution in telomeric DNA quadruplex

Frontiers in chemistry, 2024, Vol.12, p.1330378-1330378

2024

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Conditional DnaB Protein Splicing Is Reversibly Inhibited by Zinc in Mycobacteria

mBio, 2020-07, Vol.11 (4)

2020

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Challenges with Simulating Modified RNA: Insights into Role and Reciprocity of Experimental and Computational Approaches

Genes, 2022-03, Vol.13 (3), p.540

2022

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Terpene Chain Length Affects the Base Pairing Discrimination of S-geranyl-2-thiouridine in RNA Duplex

iScience, 2020-12, Vol.23 (12), p.101866-101866, Article 101866

2020

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Silencing of the tRNA Modification Enzyme Cdkal1 Effects Functional Insulin Synthesis in NIT-1 Cells: tRNALys3 Lacking ms2- (ms2t6A37) is Unable to Establish Sufficient Anticodon:Codon Interactions to Decode the Wobble Codon AAG

Frontiers in molecular biosciences, 2021-02, Vol.7, p.584228-584228

2021

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Integrating ab initio and template-based algorithms for protein–protein complex structure prediction

Bioinformatics, 2020-02, Vol.36 (3), p.751-757

2020

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Inosine-Induced Base Pairing Diversity during Reverse Transcription

ACS chemical biology, 2024-02, Vol.19 (2), p.348-356

2024

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Physical Chemistry of a Single tRNA-Modified Nucleoside Regulates Decoding of the Synonymous Lysine Wobble Codon and Affects Type 2 Diabetes

The journal of physical chemistry. B, 2022-02, Vol.126 (6), p.1168-1177

2022

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Toehold clipping: A mechanism for remote control of DNA strand displacement

Nucleic acids research, 2023-05, Vol.51 (8), p.4055

2023

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Structural Effects of Modifications on Interactions of Thrombin Binding Aptamer with Thrombin: A Molecular Dynamic Study

Biophysical journal, 2021-02, Vol.120 (3), p.176a-176a

2021

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Performance of ZDOCK and IRAD in CAPRI rounds 39‐45

Proteins, structure, function, and bioinformatics, 2020-08, Vol.88 (8), p.1050-1054

2020

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Advances in RNA molecular dynamics: a simulator's guide to RNA force fields

Wiley interdisciplinary reviews. RNA, 2017-03, Vol.8 (2), p.np-n/a

2017

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Synthesis, base pairing and structure studies of geranylated RNA

Nucleic acids research, 2016-07, Vol.44 (13), p.6036

2016

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Understanding Effect of Geranylation of tRNALys on Ribosome Binding: A Computational Study

Biophysical journal, 2017-02, Vol.112 (3), p.488a-488a

2017

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Understanding Effect of Geranylation of tRNA Lys on Ribosome Binding: A Computational Study

Biophysical journal, 2017-02, Vol.112 (3), p.488

2017

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A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine

Journal of molecular biology, 2020-02, Vol.432 (4), p.913-929

2020

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Nature’s Selection of Geranyl Group as a tRNA Modification: The Effects of Chain Length on Base-Pairing Specificity

ACS chemical biology, 2017-06, Vol.12 (6), p.1504-1513

2017

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Understanding the Effect of Post Transcriptional Modifications in the Anticodon Stem Loop of E.coli tRNA Arginine

Biophysical journal, 2016-02, Vol.110 (3), p.235a-235a

2016

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Post‐transcriptional Modifications Alter Anticodon Loop Dynamics and Codon Recognition in E. coli tRNA Arg1,2

The FASEB journal, 2016-04, Vol.30 (S1)

2016

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Silencing of the tRNA Modification Enzyme Cdkal1 Effects Functional Insulin Synthesis in NIT-1 Cells: tRNA Lys3 Lacking ms 2 - (ms 2 t 6 A 37 ) is Unable to Establish Sufficient Anticodon:Codon Interactions to Decode the Wobble Codon AAG

Frontiers in molecular biosciences, 2020, Vol.7, p.584228

2020

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Modification of messenger RNA by 2'-O-methylation regulates gene expression in vivo

The unusual structural properties and potential biological relevance of switchback DNA

Celebrating wobble decoding: Half a century and still much is new

High-throughput single-molecule quantification of individual base stacking energies in nucleic acids

Structural and Binding Effects of Chemical Modifications on Thrombin Binding Aptamer (TBA)

Structural effects of inosine substitution in telomeric DNA quadruplex

Conditional DnaB Protein Splicing Is Reversibly Inhibited by Zinc in Mycobacteria

Challenges with Simulating Modified RNA: Insights into Role and Reciprocity of Experimental and Computational Approaches

Terpene Chain Length Affects the Base Pairing Discrimination of S-geranyl-2-thiouridine in RNA Duplex

Silencing of the tRNA Modification Enzyme Cdkal1 Effects Functional Insulin Synthesis in NIT-1 Cells: tRNALys3 Lacking ms2- (ms2t6A37) is Unable to Establish Sufficient Anticodon:Codon Interactions to Decode the Wobble Codon AAG

Integrating ab initio and template-based algorithms for protein–protein complex structure prediction

Inosine-Induced Base Pairing Diversity during Reverse Transcription

Physical Chemistry of a Single tRNA-Modified Nucleoside Regulates Decoding of the Synonymous Lysine Wobble Codon and Affects Type 2 Diabetes

Toehold clipping: A mechanism for remote control of DNA strand displacement

Structural Effects of Modifications on Interactions of Thrombin Binding Aptamer with Thrombin: A Molecular Dynamic Study

Performance of ZDOCK and IRAD in CAPRI rounds 39‐45

Advances in RNA molecular dynamics: a simulator's guide to RNA force fields

Synthesis, base pairing and structure studies of geranylated RNA

Understanding Effect of Geranylation of tRNALys on Ribosome Binding: A Computational Study

Understanding Effect of Geranylation of tRNA Lys on Ribosome Binding: A Computational Study

A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine

Nature’s Selection of Geranyl Group as a tRNA Modification: The Effects of Chain Length on Base-Pairing Specificity

Understanding the Effect of Post Transcriptional Modifications in the Anticodon Stem Loop of E.coli tRNA Arginine

Post‐transcriptional Modifications Alter Anticodon Loop Dynamics and Codon Recognition in E. coli tRNA Arg1,2

Silencing of the tRNA Modification Enzyme Cdkal1 Effects Functional Insulin Synthesis in NIT-1 Cells: tRNA Lys3 Lacking ms 2 - (ms 2 t 6 A 37 ) is Unable to Establish Sufficient Anticodon:Codon Interactions to Decode the Wobble Codon AAG

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