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Crystal Cryocooling Distorts Conformational Heterogeneity in a Model Michaelis Complex of DHFR

Structure (London), 2014-06, Vol.22 (6), p.899-910

2014

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Ligand binding remodels protein side-chain conformational heterogeneity

eLife, 2022-03, Vol.11

2022

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Automated multiconformer model building for X-ray crystallography and cryo-EM

eLife, 2024-06, Vol.12

2024

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Integrative, dynamic structural biology at atomic resolution--it's about time

Nature methods, 2015-04, Vol.12 (4), p.307

2015

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Tau-ism: The Yin and Yang of Microtubule Sliding, Detachment, and Rupture

Biophysical journal, 2015-12, Vol.109 (11), p.2215-2217

2015

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Automated diffraction image analysis and spot searching for high-throughput crystal screening

Journal of applied crystallography, 2006-02, Vol.39 (1), p.112-119

2006

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Accessing protein conformational ensembles using room-temperature X-ray crystallography

Proceedings of the National Academy of Sciences - PNAS, 2011-09, Vol.108 (39), p.16247-16252

2011

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Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR

Proceedings of the National Academy of Sciences - PNAS, 2014-01, Vol.111 (4), p.E445-E454

2014

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Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit

PLoS computational biology, 2015-10, Vol.11 (10), p.e1004507-e1004507

2015

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Automated identification of functional dynamic contact networks from X-ray crystallography

Nature methods, 2013-09, Vol.10 (9), p.896

2013

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Cryo-EM structures of Helicobacter pylori vacuolating cytotoxin A oligomeric assemblies at near-atomic resolution

Proceedings of the National Academy of Sciences - PNAS, 2019-04, Vol.116 (14), p.6800-6805

2019

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Molecular Recognition of M1-Linked Ubiquitin Chains by Native and Phosphorylated UBAN Domains

Journal of molecular biology, 2019-08, Vol.431 (17), p.3146-3156

2019

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Characterizing RNA ensembles from NMR data with kinematic models

Nucleic acids research, 2014-09, Vol.42 (15), p.9562

2014

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Microbes 'sieve' ions to start the nitrogen cycle

Nature (London), 2024-06, Vol.630 (8015), p.43-44

van den Bedem, Henry

2024

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Microbes 'sieve' ions on their surface to start the nitrogen cycle

Nature (London), 2024-05, Vol.630 (8015), p.43-44

van den Bedem, Henry

2024

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Modeling discrete heterogeneity in X‐ray diffraction data by fitting multi‐conformers

Acta crystallographica. Section D, Biological crystallography., 2009-10, Vol.65 (10), p.1107-1117

2009

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Nullspace Sampling with Holonomic Constraints Reveals Molecular Mechanisms of Protein Gαs

PLoS computational biology, 2015-07, Vol.11 (7), p.e1004361-e1004361

2015

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Discovery of a cryptic pocket in the AI-predicted structure of PPM1D phosphatase explains the binding site and potency of its allosteric inhibitors

Frontiers in molecular biosciences, 2023-04, Vol.10, p.1171143-1171143

2023

Volltextzugriff (PDF)

Atomic resolution experimental phase information reveals extensive disorder and bound 2-methyl-2,4-pentanediol in Ca2+-calmodulin

Acta crystallographica. Section D, Structural biology, 2016-01, Vol.72 (1), p.83-92

2016

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Distributed structure determination at the JCSG

Acta crystallographica. Section D, Biological crystallography., 2011-04, Vol.67 (4), p.368-375

2011

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Reproducibility of protein x-ray diffuse scattering and potential utility for modeling atomic displacement parameters

Structural dynamics (Melville, N.Y.), 2021-07, Vol.8 (4), p.044701-044701

2021

Volltextzugriff (PDF)

Modeling discrete heterogeneity in X-ray diffraction data by fitting multi-conformers

Acta crystallographica. Section D, Biological crystallography., 2009-10, Vol.65 (10), p.1107-1117

2009

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SARS-CoV-2 main protease mutation analysis via a kinematic method

Proteins, structure, function, and bioinformatics, 2023-11, Vol.91 (11), p.1496-1509

2023

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qFit-ligand reveals widespread conformational heterogeneity of drug-like molecules in X-ray electron-density maps

Acta crystallographica. Section A, Foundations and advances, 2018-07, Vol.74 (a1), p.a452-a452

van den Bedem, Henry

2018

Volltextzugriff (PDF)

Kinematic Vibrational Entropy Assessment and Analysis of SARS CoV‑2 Main Protease

Journal of chemical information and modeling, 2022-06, Vol.62 (11), p.2869-2879

2022

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Crystal Cryocooling Distorts Conformational Heterogeneity in a Model Michaelis Complex of DHFR

Ligand binding remodels protein side-chain conformational heterogeneity

Automated multiconformer model building for X-ray crystallography and cryo-EM

Integrative, dynamic structural biology at atomic resolution--it's about time

Tau-ism: The Yin and Yang of Microtubule Sliding, Detachment, and Rupture

Automated diffraction image analysis and spot searching for high-throughput crystal screening

Accessing protein conformational ensembles using room-temperature X-ray crystallography

Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR

Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit

Automated identification of functional dynamic contact networks from X-ray crystallography

Cryo-EM structures of Helicobacter pylori vacuolating cytotoxin A oligomeric assemblies at near-atomic resolution

Molecular Recognition of M1-Linked Ubiquitin Chains by Native and Phosphorylated UBAN Domains

Characterizing RNA ensembles from NMR data with kinematic models

Microbes 'sieve' ions to start the nitrogen cycle

Microbes 'sieve' ions on their surface to start the nitrogen cycle

Modeling discrete heterogeneity in X‐ray diffraction data by fitting multi‐conformers

Nullspace Sampling with Holonomic Constraints Reveals Molecular Mechanisms of Protein Gαs

Discovery of a cryptic pocket in the AI-predicted structure of PPM1D phosphatase explains the binding site and potency of its allosteric inhibitors

Atomic resolution experimental phase information reveals extensive disorder and bound 2-methyl-2,4-pentanediol in Ca2+-calmodulin

Distributed structure determination at the JCSG

Reproducibility of protein x-ray diffuse scattering and potential utility for modeling atomic displacement parameters

Modeling discrete heterogeneity in X-ray diffraction data by fitting multi-conformers

SARS-CoV-2 main protease mutation analysis via a kinematic method

qFit-ligand reveals widespread conformational heterogeneity of drug-like molecules in X-ray electron-density maps

Kinematic Vibrational Entropy Assessment and Analysis of SARS CoV‑2 Main Protease

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