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Exposing the small protein load of bacterial life

FEMS microbiology reviews, 2023-11, Vol.47 (6)

2023

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Bacterial riboproteogenomics: the era of N-terminal proteoform existence revealed

FEMS microbiology reviews, 2020-07, Vol.44 (4), p.418-431

2020

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eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs

Nucleic acids research, 2017-07, Vol.45 (13), p.7997-8013

2017

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Extracellular Vesicles from Follicular and Ampullary Fluid Isolated by Density Gradient Ultracentrifugation Improve Bovine Embryo Development and Quality

International journal of molecular sciences, 2021-01, Vol.22 (2), p.578

2021

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Selecting protein N-terminal peptides by combined fractional diagonal chromatography

Nature protocols, 2011-08, Vol.6 (8), p.1130-1141

2011

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N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana

Molecular & cellular proteomics, 2017-06, Vol.16 (6), p.1064-1080

2017

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An Organellar Nα-Acetyltransferase, Naa60, Acetylates Cytosolic N Termini of Transmembrane Proteins and Maintains Golgi Integrity

Cell reports (Cambridge), 2015-03, Vol.10 (8), p.1362-1374

2015

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Lost and Found: Re-searching and Re-scoring Proteomics Data Aids Genome Annotation and Improves Proteome Coverage

mSystems, 2020-10, Vol.5 (5)

2020

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Hidden in plain sight: challenges in proteomics detection of small ORF-encoded polypeptides

microLife, 2022, Vol.3, p.uqac005

2022

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Charting the N-Terminal Acetylome: A Comprehensive Map of Human NatA Substrates

International journal of molecular sciences, 2021-10, Vol.22 (19), p.10692

Van Damme, Petra

2021

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N-Terminal Acetyltransferase Naa40p Whereabouts Put into N-Terminal Proteoform Perspective

International journal of molecular sciences, 2021-04, Vol.22 (7), p.3690

2021

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Proteogenomics in Aid of Host-Pathogen Interaction Studies: A Bacterial Perspective

Proteomes, 2017-10, Vol.5 (4), p.26

2017

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Dissecting apoptosis the omics way

eLife, 2013-11, Vol.2, p.e01587-e01587

Van Damme, Petra

2013

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N-terminal acetylome analysis reveals the specificity of Naa50 (Nat5) and suggests a kinetic competition between N-terminal acetyltransferases and methionine aminopeptidases

Proteomics (Weinheim), 2015-07, Vol.15 (14), p.2436-2446

2015

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REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes

Nucleic acids research, 2017-11, Vol.45 (20), p.e168-e168

2017

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C-terminomics: Targeted analysis of natural and posttranslationally modified protein and peptide C-termini

Proteomics (Weinheim), 2015-03, Vol.15 (5-6), p.903-914

2015

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Bacterial Genetic Engineering by Means of Recombineering for Reverse Genetics

Frontiers in microbiology, 2020-09, Vol.11, p.548410-548410

2020

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Proteins à la carte: riboproteogenomic exploration of bacterial N-terminal proteoform expression

mBio, 2024-04, Vol.15 (4), p.e0033324-e0033324

2024

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Positional proteomics reveals differences in N‐terminal proteoform stability

Molecular systems biology, 2016-02, Vol.12 (2), p.858-n/a

2016

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From prediction to function: Current practices and challenges towards the functional characterization of type III effectors

Frontiers in microbiology, 2023-02, Vol.14, p.1113442

2023

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PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms

Molecular & cellular proteomics, 2019-08, Vol.18 (8), p.S126-S140

2019

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PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration

Nucleic acids research, 2015-03, Vol.43 (5), p.e29-e29

2015

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Omics Assisted N-terminal Proteoform and Protein Expression Profiling On Methionine Aminopeptidase 1 (MetAP1) Deletion

Molecular & cellular proteomics, 2018-04, Vol.17 (4), p.694-708

2018

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Proteomics Analyses Reveal the Evolutionary Conservation and Divergence of N-Terminal Acetyltransferases from Yeast and Humans

Proceedings of the National Academy of Sciences - PNAS, 2009-05, Vol.106 (20), p.8157-8162

2009

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Protein alpha‐N‐acetylation studied by N‐terminomics

The FEBS journal, 2011-10, Vol.278 (20), p.3822-3834

2011

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Exposing the small protein load of bacterial life

Bacterial riboproteogenomics: the era of N-terminal proteoform existence revealed

eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs

Extracellular Vesicles from Follicular and Ampullary Fluid Isolated by Density Gradient Ultracentrifugation Improve Bovine Embryo Development and Quality

Selecting protein N-terminal peptides by combined fractional diagonal chromatography

N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana

An Organellar Nα-Acetyltransferase, Naa60, Acetylates Cytosolic N Termini of Transmembrane Proteins and Maintains Golgi Integrity

Lost and Found: Re-searching and Re-scoring Proteomics Data Aids Genome Annotation and Improves Proteome Coverage

Hidden in plain sight: challenges in proteomics detection of small ORF-encoded polypeptides

Charting the N-Terminal Acetylome: A Comprehensive Map of Human NatA Substrates

N-Terminal Acetyltransferase Naa40p Whereabouts Put into N-Terminal Proteoform Perspective

Proteogenomics in Aid of Host-Pathogen Interaction Studies: A Bacterial Perspective

Dissecting apoptosis the omics way

N-terminal acetylome analysis reveals the specificity of Naa50 (Nat5) and suggests a kinetic competition between N-terminal acetyltransferases and methionine aminopeptidases

REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes

C-terminomics: Targeted analysis of natural and posttranslationally modified protein and peptide C-termini

Bacterial Genetic Engineering by Means of Recombineering for Reverse Genetics

Proteins à la carte: riboproteogenomic exploration of bacterial N-terminal proteoform expression

Positional proteomics reveals differences in N‐terminal proteoform stability

From prediction to function: Current practices and challenges towards the functional characterization of type III effectors

PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration

Omics Assisted N-terminal Proteoform and Protein Expression Profiling On Methionine Aminopeptidase 1 (MetAP1) Deletion

Proteomics Analyses Reveal the Evolutionary Conservation and Divergence of N-Terminal Acetyltransferases from Yeast and Humans

Protein alpha‐N‐acetylation studied by N‐terminomics

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