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Membrane protein structure: prediction versus reality

Annual review of biochemistry, 2007-01, Vol.76 (1), p.125-140

2007

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Cotranslational Protein Folding inside the Ribosome Exit Tunnel

Cell reports (Cambridge), 2015-09, Vol.12 (10), p.1533-1540

2015

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Structural basis of l -tryptophan-dependent inhibition of release factor 2 by the TnaC arrest peptide

Nucleic acids research, 2021-09, Vol.49 (16), p.9539-9547

2021

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Prediction of membrane-protein topology from first principles

Proceedings of the National Academy of Sciences - PNAS, 2008-05, Vol.105 (20), p.7177-7181

2008

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GFP-based optimization scheme for the overexpression and purification of eukaryotic membrane proteins in Saccharomyces cerevisiae

Nature protocols, 2008-01, Vol.3 (5), p.784-798

2008

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The shape of the bacterial ribosome exit tunnel affects cotranslational protein folding

eLife, 2018-11, Vol.7

2018

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Structural and mutational analysis of the ribosome-arresting human XBP1u

eLife, 2019-06, Vol.8

2019

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The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling

eLife, 2017-05, Vol.6

2017

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Membrane-protein topology

Nature reviews. Molecular cell biology, 2006-12, Vol.7 (12), p.909-918

von Heijne, Gunnar

2006

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Residue-by-residue analysis of cotranslational membrane protein integration in vivo

eLife, 2021-02, Vol.10

2021

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Genome‐wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

Protein science, 1998-04, Vol.7 (4), p.1029-1038

1998

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Membrane topology of the Drosophila OR83b odorant receptor

FEBS letters, 2007-12, Vol.581 (29), p.5601-5604

2007

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Structure and topology around the cleavage site regulate post-translational cleavage of the HIV-1 gp160 signal peptide

eLife, 2017-07, Vol.6

2017

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Orientational Preferences of Neighboring Helices Can Drive ER Insertion of a Marginally Hydrophobic Transmembrane Helix

Molecular cell, 2012-02, Vol.45 (4), p.529-540

2012

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Mechanisms of Integral Membrane Protein Insertion and Folding

Journal of molecular biology, 2015-03, Vol.427 (5), p.999-1022

2015

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SignalP 5.0 improves signal peptide predictions using deep neural networks

Nature biotechnology, 2019-04, Vol.37 (4), p.420-423

2019

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The ribosome modulates folding inside the ribosomal exit tunnel

Communications biology, 2021-05, Vol.4 (1), p.523-523, Article 523

2021

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SignalP 6.0 predicts all five types of signal peptides using protein language models

Nature biotechnology, 2022-07, Vol.40 (7), p.1023-1025

2022

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Arginine in Membranes: The Connection Between Molecular Dynamics Simulations and Translocon-Mediated Insertion Experiments

The Journal of membrane biology, 2011-01, Vol.239 (1-2), p.35-48

2011

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A Brief History of Protein Sorting Prediction

The Protein Journal, 2019-06, Vol.38 (3), p.200-216

2019

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Small protein domains fold inside the ribosome exit tunnel

FEBS letters, 2016-03, Vol.590 (5), p.655-660

2016

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Cotranslational folding of membrane proteins probed by arrest-peptide–mediated force measurements

Proceedings of the National Academy of Sciences - PNAS, 2013-09, Vol.110 (36), p.14640-14645

2013

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Detecting sequence signals in targeting peptides using deep learning

Life science alliance, 2019-10, Vol.2 (5), p.e201900429

2019

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Biogenesis of inner membrane proteins in Escherichia coli

Annual review of microbiology, 2005-01, Vol.59 (1), p.329-355

2005

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Locating proteins in the cell using TargetP, SignalP and related tools

Nature protocols, 2007-04, Vol.2 (4), p.953-971

2007

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Membrane protein structure: prediction versus reality

Cotranslational Protein Folding inside the Ribosome Exit Tunnel

Structural basis of l -tryptophan-dependent inhibition of release factor 2 by the TnaC arrest peptide

Prediction of membrane-protein topology from first principles

GFP-based optimization scheme for the overexpression and purification of eukaryotic membrane proteins in Saccharomyces cerevisiae

The shape of the bacterial ribosome exit tunnel affects cotranslational protein folding

Structural and mutational analysis of the ribosome-arresting human XBP1u

The force-sensing peptide VemP employs extreme compaction and secondary structure formation to induce ribosomal stalling

Membrane-protein topology

Residue-by-residue analysis of cotranslational membrane protein integration in vivo

Genome‐wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

Membrane topology of the Drosophila OR83b odorant receptor

Structure and topology around the cleavage site regulate post-translational cleavage of the HIV-1 gp160 signal peptide

Orientational Preferences of Neighboring Helices Can Drive ER Insertion of a Marginally Hydrophobic Transmembrane Helix

Mechanisms of Integral Membrane Protein Insertion and Folding

SignalP 5.0 improves signal peptide predictions using deep neural networks

The ribosome modulates folding inside the ribosomal exit tunnel

SignalP 6.0 predicts all five types of signal peptides using protein language models

Arginine in Membranes: The Connection Between Molecular Dynamics Simulations and Translocon-Mediated Insertion Experiments

A Brief History of Protein Sorting Prediction

Small protein domains fold inside the ribosome exit tunnel

Cotranslational folding of membrane proteins probed by arrest-peptide–mediated force measurements

Detecting sequence signals in targeting peptides using deep learning

Biogenesis of inner membrane proteins in Escherichia coli

Locating proteins in the cell using TargetP, SignalP and related tools

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