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theoretical analysis of how strain-specific viruses can control microbial species diversity

Proceedings of the National Academy of Sciences - PNAS, 2014-05, Vol.111 (21), p.7813-7818

2014

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Correction: Individual-based model highlights the importance of trade-offs for virus-host population dynamics and long-term co-existence

PLoS computational biology, 2023-10, Vol.19 (10), p.e1011600-e1011600

2023

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Individual-based model highlights the importance of trade-offs for virus-host population dynamics and long-term co-existence

PLoS computational biology, 2022-06, Vol.18 (6), p.e1010228-e1010228

2022

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Molecular evidence of parallel evolution in a cyanophage

PloS one, 2023-02, Vol.18 (2), p.e0281537-e0281537

2023

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Host-virus-predator coexistence in a grey-box model with dynamic optimization of host fitness

The ISME Journal, 2019-12, Vol.13 (12), p.3102-3111

2019

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Temperate infection in a virus-host system previously known for virulent dynamics

Nature communications, 2020-09, Vol.11 (1), p.4626-4626, Article 4626

2020

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Killing the predator: impacts of highest-predator mortality on the global-ocean ecosystem structure

Biogeosciences, 2024-05, Vol.21 (10), p.2493-2507

2024

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Adding a cost of resistance description extends the ability of virus-host model to explain observed patterns in structure and function of pelagic microbial communities

Environmental microbiology, 2013-06, Vol.15 (6), p.1842-1852

2013

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Differential toxicity of bioorthogonal non-canonical amino acids (BONCAT) in Escherichia coli

Journal of microbiological methods, 2023-03, Vol.206, p.106679-106679, Article 106679

2023

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Reproducing the virus‐to‐copepod link in Arctic mesocosms using host fitness optimization

Limnology and oceanography, 2021-01, Vol.66 (S1), p.S303-S313

2021

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Optimal defense strategies in an idealized microbial food web under trade-off between competition and defense

PloS one, 2014-07, Vol.9 (7), p.e101415-e101415

2014

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SAR11 viruses and defensive host strains

Nature (London), 2013-07, Vol.499 (7459), p.E3-E4

2013

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Quantifying Tradeoffs for Marine Viruses

Frontiers in Marine Science, 2016-12, Vol.3

2016

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Linking internal and external bacterial community control gives mechanistic framework for pelagic virus-to-bacteria ratios

Environmental microbiology, 2016-11, Vol.18 (11), p.3932-3948

2016

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Simple models combining competition, defence and resource availability have broad implications in pelagic microbial food webs

Ecology letters, 2018-09, Vol.21 (9), p.1440-1452

2018

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Adaptive evolution of viruses infecting marine microalgae (haptophytes), from acute infections to stable coexistence

Biological reviews of the Cambridge Philosophical Society, 2022-02, Vol.97 (1), p.179-194

2022

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Dampened copepod-mediated trophic cascades in a microzooplankton-dominated microbial food web: A mesocosm study

Limnology and oceanography, 2017-05, Vol.62 (3), p.1031-1044

2017

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The Response of Heterotrophic Prokaryote and Viral Communities to Labile Organic Carbon Inputs Is Controlled by the Predator Food Chain Structure

Viruses, 2017-08, Vol.9 (9), p.238

2017

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Modelling approaches for capturing plankton diversity (MODIV), their societal applications and data needs

Frontiers in Marine Science, 2022-08, Vol.9

2022

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Fractal Hypothesis of the Pelagic Microbial Ecosystem-Can Simple Ecological Principles Lead to Self-Similar Complexity in the Pelagic Microbial Food Web?

Frontiers in microbiology, 2015-12, Vol.6, p.1357-1357

2015

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Successful strategies in size structured mixotrophic food webs

Aquatic ecology, 2013-09, Vol.47 (3), p.329-347

2013

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What difference does it make if viruses are strain-, rather than species-specific?

Frontiers in microbiology, 2015-04, Vol.6, p.320-320

2015

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The Scaled Subspaces Method: A new trait-based approach to model communities of populations with largely inhomogeneous density

Ecological modelling, 2013-02, Vol.251, p.173-186

2013

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Adaptive evolution of viruses infecting marine microalgae (haptophytes), from acute infections to stable coexistence

Biological reviews of the Cambridge Philosophical Society, 2021

2021

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theoretical analysis of how strain-specific viruses can control microbial species diversity

Correction: Individual-based model highlights the importance of trade-offs for virus-host population dynamics and long-term co-existence

Individual-based model highlights the importance of trade-offs for virus-host population dynamics and long-term co-existence

Defining Planktonic Protist Functional Groups on Mechanisms for Energy and Nutrient Acquisition: Incorporation of Diverse Mixotrophic Strategies

Molecular evidence of parallel evolution in a cyanophage

Host-virus-predator coexistence in a grey-box model with dynamic optimization of host fitness

Temperate infection in a virus-host system previously known for virulent dynamics

Killing the predator: impacts of highest-predator mortality on the global-ocean ecosystem structure

Adding a cost of resistance description extends the ability of virus-host model to explain observed patterns in structure and function of pelagic microbial communities

Differential toxicity of bioorthogonal non-canonical amino acids (BONCAT) in Escherichia coli

Reproducing the virus‐to‐copepod link in Arctic mesocosms using host fitness optimization

Optimal defense strategies in an idealized microbial food web under trade-off between competition and defense

SAR11 viruses and defensive host strains

Quantifying Tradeoffs for Marine Viruses

Linking internal and external bacterial community control gives mechanistic framework for pelagic virus-to-bacteria ratios

Simple models combining competition, defence and resource availability have broad implications in pelagic microbial food webs

Adaptive evolution of viruses infecting marine microalgae (haptophytes), from acute infections to stable coexistence

Dampened copepod-mediated trophic cascades in a microzooplankton-dominated microbial food web: A mesocosm study

The Response of Heterotrophic Prokaryote and Viral Communities to Labile Organic Carbon Inputs Is Controlled by the Predator Food Chain Structure

Modelling approaches for capturing plankton diversity (MODIV), their societal applications and data needs

Fractal Hypothesis of the Pelagic Microbial Ecosystem-Can Simple Ecological Principles Lead to Self-Similar Complexity in the Pelagic Microbial Food Web?

Successful strategies in size structured mixotrophic food webs

What difference does it make if viruses are strain-, rather than species-specific?

The Scaled Subspaces Method: A new trait-based approach to model communities of populations with largely inhomogeneous density

Adaptive evolution of viruses infecting marine microalgae (haptophytes), from acute infections to stable coexistence

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