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Machine Learning Methods in Drug Discovery

Molecules (Basel, Switzerland), 2020-11, Vol.25 (22), p.5277

2020

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Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D

Nucleic acids research, 2018-04, Vol.46 (7), p.e38

2018

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Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

Journal of Clinical Microbiology, 2012-04, Vol.50 (4), p.1355-1361

2012

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Decoding the epitranscriptional landscape from native RNA sequences

Nucleic acids research, 2021-01, Vol.49 (2), p.e7

2021

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Comparison of 61 Sequenced Escherichia coli Genomes

Microbial ecology, 2010-11, Vol.60 (4), p.708-720

2010

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RNAmmer: consistent and rapid annotation of ribosomal RNA genes

Nucleic acids research, 2007-05, Vol.35 (9), p.3100

2007

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Benchmarking of methods for genomic taxonomy

Journal of clinical microbiology, 2014-05, Vol.52 (5), p.1529-1539

2014

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Insights from 20 years of bacterial genome sequencing

Functional & integrative genomics, 2015-03, Vol.15 (2), p.141-161

2015

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Comparison of Monkeypox virus genomes from the 2017 Nigeria outbreak and the 2022 outbreak

Journal of applied microbiology, 2022-12, Vol.133 (6), p.3690-3698

2022

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Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes

BMC genomics, 2012-10, Vol.13 (1), p.577-577

2012

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Case of Microcephaly after Congenital Infection with Asian Lineage Zika Virus, Thailand

Emerging infectious diseases, 2018-09, Vol.24 (9), p.1758-1761

2018

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transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

Proceedings of the National Academy of Sciences - PNAS, 2012-05, Vol.109 (20), p.E1277-E1286

2012

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Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104

Applied and environmental microbiology, 2016-04, Vol.82 (8), p.2516-2526

2016

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Sigma factors in a thousand E. coli genomes

Environmental microbiology, 2013-12, Vol.15 (12), p.3121-3129

2013

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A Closer Look at Bacteroides: Phylogenetic Relationship and Genomic Implications of a Life in the Human Gut

Microbial ecology, 2011-04, Vol.61 (3), p.473-485

2011

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Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us?

BMC bioinformatics, 2017-12, Vol.18 (Suppl 14), p.471-471, Article 471

2017

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Microbial comparative pan-genomics using binomial mixture models

BMC genomics, 2009-08, Vol.10 (1), p.385-385

2009

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Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis

Applied and Environmental Microbiology, 2016-01, Vol.82 (1), p.375-383

2016

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Microbial taxonomy in the post-genomic era: Rebuilding from scratch?

Archives of microbiology, 2015-04, Vol.197 (3), p.359-370

2015

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Genomic variation in Salmonella enterica core genes for epidemiological typing

BMC genomics, 2012-03, Vol.13 (1), p.88-88, Article 88

2012

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Genomic surveillance of SARS-CoV-2 using long-range PCR primers

Frontiers in microbiology, 2024-02, Vol.15, p.1272972-1272972

2024

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Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups

Communications biology, 2021-01, Vol.4 (1), p.117-117, Article 117

2021

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Amino acid usage is asymmetrically biased in AT- and GC-rich microbial genomes

PloS one, 2013-07, Vol.8 (7), p.e69878-e69878

2013

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Rapid Sequencing of Multiple RNA Viruses in Their Native Form

Frontiers in microbiology, 2019-02, Vol.10, p.260-260

2019

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Comparative genomics to delineate pathogenic potential in non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway

PloS one, 2014-10, Vol.9 (10), p.e111788

2014

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Machine Learning Methods in Drug Discovery

Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

Decoding the epitranscriptional landscape from native RNA sequences

Comparison of 61 Sequenced Escherichia coli Genomes

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

Benchmarking of methods for genomic taxonomy

Insights from 20 years of bacterial genome sequencing

Comparison of Monkeypox virus genomes from the 2017 Nigeria outbreak and the 2022 outbreak

Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes

Case of Microcephaly after Congenital Infection with Asian Lineage Zika Virus, Thailand

transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104

Sigma factors in a thousand E. coli genomes

A Closer Look at Bacteroides: Phylogenetic Relationship and Genomic Implications of a Life in the Human Gut

Suggested mechanisms for Zika virus causing microcephaly: what do the genomes tell us?

Microbial comparative pan-genomics using binomial mixture models

Diversity of Pseudomonas Genomes, Including Populus-Associated Isolates, as Revealed by Comparative Genome Analysis

Microbial taxonomy in the post-genomic era: Rebuilding from scratch?

Genomic variation in Salmonella enterica core genes for epidemiological typing

Genomic surveillance of SARS-CoV-2 using long-range PCR primers

Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups

Amino acid usage is asymmetrically biased in AT- and GC-rich microbial genomes

Rapid Sequencing of Multiple RNA Viruses in Their Native Form

Comparative genomics to delineate pathogenic potential in non-O157 Shiga toxin-producing Escherichia coli (STEC) from patients with and without haemolytic uremic syndrome (HUS) in Norway

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