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Big Data Bioinformatics

Journal of cellular physiology, 2014-12, Vol.229 (12), p.1896-1900

2014

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Protein mistranslation protects bacteria against oxidative stress

Nucleic acids research, 2015-02, Vol.43 (3), p.1740-1748

2015

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CD36-Mediated Metabolic Rewiring of Breast Cancer Cells Promotes Resistance to HER2-Targeted Therapies

Cell reports (Cambridge), 2019-12, Vol.29 (11), p.3405-3420.e5

2019

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An integrative ENCODE resource for cancer genomics

Nature communications, 2020-07, Vol.11 (1), p.3696-11, Article 3696

2020

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MYC Mediates mRNA Cap Methylation of Canonical Wnt/β-Catenin Signaling Transcripts By Recruiting CDK7 and RNA Methyltransferase

Molecular cancer research, 2017-02, Vol.15 (2), p.213-224

2017

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Statins associate with improved mortality among patients with certain histological subtypes of lung cancer

Lung cancer (Amsterdam, Netherlands), 2018-12, Vol.126, p.89-96

2018

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Computational Investigation of Homologous Recombination DNA Repair Deficiency in Sporadic Breast Cancer

Scientific reports, 2017-11, Vol.7 (1), p.15742-15, Article 15742

2017

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The E2F4 prognostic signature predicts pathological response to neoadjuvant chemotherapy in breast cancer patients

BMC cancer, 2017-05, Vol.17 (1), p.306-306, Article 306

2017

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Integrative analysis of cancer genes in a functional interactome

Scientific reports, 2016-06, Vol.6 (1), p.29228-29228, Article 29228

2016

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Cancer cell line specific co-factors modulate the FOXM1 cistrome

Oncotarget, 2017-09, Vol.8 (44), p.76498-76515

2017

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E2F4 regulatory program predicts patient survival prognosis in breast cancer

Breast cancer research : BCR, 2014-12, Vol.16 (6), p.486-486, Article 486

2014

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Regulators associated with clinical outcomes revealed by DNA methylation data in breast cancer

PLoS computational biology, 2015-05, Vol.11 (5), p.e1004269-e1004269

2015

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Receptor tyrosine kinase ERBB4 mediates acquired resistance to ERBB2 inhibitors in breast cancer cells

Cell cycle (Georgetown, Tex.), 2015-02, Vol.14 (4), p.648-655

2015

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Integrative analysis of survival-associated gene sets in breast cancer

BMC medical genomics, 2015-03, Vol.8 (1), p.11-11, Article 11

2015

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Application of pharmacologically induced transcriptomic profiles to interrogate PI3K-Akt-mTOR pathway activity associated with cancer patient prognosis

Oncotarget, 2016-12, Vol.7 (51), p.84142-84154

2016

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Integrative Genomic Analyses Yield Cell-Cycle Regulatory Programs with Prognostic Value

Molecular cancer research, 2016-04, Vol.14 (4), p.332-343

2016

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Pan-cancer systematic identification of lncRNAs associated with cancer prognosis

PeerJ (San Francisco, CA), 2020-03, Vol.8, p.e8797-e8797, Article e8797

2020

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In silico frameworks for systematic pre-clinical screening of potential anti-leukemia therapeutics

Expert opinion on drug discovery, 2016-12, Vol.11 (12), p.1213-1222

2016

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Application of RNAi-induced gene expression profiles for prognostic prediction in breast cancer

Genome medicine, 2016-10, Vol.8 (1), p.114-114, Article 114

2016

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Transcription factor binding profiles reveal cyclic expression of human protein-coding genes and non-coding RNAs

PLoS computational biology, 2013-07, Vol.9 (7), p.e1003132-e1003132

2013

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Unsupervised feature construction and knowledge extraction from genome-wide assays of breast cancer with denoising autoencoders

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 2015, p.132

2015

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Multimodal Atlas of Paired Diagnosis and Relapse AML Samples Enables Novel Therapeutic Targeting of Surface Antigens

Blood, 2023-11, Vol.142 (Supplement 1), p.164-164

2023

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Longitudinal Multimodal Atlas of AML Surface Antigens Enables Adaptive and Combinatorial Targeting

Blood, 2022-11, Vol.140 (Supplement 1), p.11804-11805

2022

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Abstract 3497: Network-based systematic inference of lncRNA activity in breast cancer

Cancer research (Chicago, Ill.), 2017-07, Vol.77 (13_Supplement), p.3497-3497

2017

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G-CSF/Plerixafor Dual-Mobilized Donor Derived CD33CAR T-Cells As Potent and Effective AML Therapy in Pre-Clinical Models

Blood, 2021-11, Vol.138 (Supplement 1), p.1716-1716

2021

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Big Data Bioinformatics

Protein mistranslation protects bacteria against oxidative stress

CD36-Mediated Metabolic Rewiring of Breast Cancer Cells Promotes Resistance to HER2-Targeted Therapies

An integrative ENCODE resource for cancer genomics

MYC Mediates mRNA Cap Methylation of Canonical Wnt/β-Catenin Signaling Transcripts By Recruiting CDK7 and RNA Methyltransferase

Statins associate with improved mortality among patients with certain histological subtypes of lung cancer

Computational Investigation of Homologous Recombination DNA Repair Deficiency in Sporadic Breast Cancer

The E2F4 prognostic signature predicts pathological response to neoadjuvant chemotherapy in breast cancer patients

Integrative analysis of cancer genes in a functional interactome

Cancer cell line specific co-factors modulate the FOXM1 cistrome

E2F4 regulatory program predicts patient survival prognosis in breast cancer

Regulators associated with clinical outcomes revealed by DNA methylation data in breast cancer

Receptor tyrosine kinase ERBB4 mediates acquired resistance to ERBB2 inhibitors in breast cancer cells

Integrative analysis of survival-associated gene sets in breast cancer

Application of pharmacologically induced transcriptomic profiles to interrogate PI3K-Akt-mTOR pathway activity associated with cancer patient prognosis

Integrative Genomic Analyses Yield Cell-Cycle Regulatory Programs with Prognostic Value

Pan-cancer systematic identification of lncRNAs associated with cancer prognosis

In silico frameworks for systematic pre-clinical screening of potential anti-leukemia therapeutics

Application of RNAi-induced gene expression profiles for prognostic prediction in breast cancer

Transcription factor binding profiles reveal cyclic expression of human protein-coding genes and non-coding RNAs

Unsupervised feature construction and knowledge extraction from genome-wide assays of breast cancer with denoising autoencoders

Multimodal Atlas of Paired Diagnosis and Relapse AML Samples Enables Novel Therapeutic Targeting of Surface Antigens

Longitudinal Multimodal Atlas of AML Surface Antigens Enables Adaptive and Combinatorial Targeting

Abstract 3497: Network-based systematic inference of lncRNA activity in breast cancer

G-CSF/Plerixafor Dual-Mobilized Donor Derived CD33CAR T-Cells As Potent and Effective AML Therapy in Pre-Clinical Models

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