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Mechanisms of scaling in pattern formation

Development (Cambridge), 2013-12, Vol.140 (24), p.4830-4843

2013

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Label-Free Imaging of Lipid-Droplet Intracellular Motion in Early Drosophila Embryos Using Femtosecond-Stimulated Raman Loss Microscopy

Biophysical journal, 2012-04, Vol.102 (7), p.1666-1675

2012

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Diversity and robustness of bone morphogenetic protein pattern formation

Development (Cambridge), 2021-04, Vol.148 (7)

2021

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Computational modeling of TGF-β2:TβRI:TβRII receptor complex assembly as mediated by the TGF-β coreceptor betaglycan

Biophysical journal, 2023-04, Vol.122 (7), p.1342-1354

2023

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Heterodimer-heterotetramer formation mediates enhanced sensor activity in a biophysical model for BMP signaling

PLoS computational biology, 2021-09, Vol.17 (9), p.e1009422-e1009422

2021

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Scale invariance of BMP signaling gradients in zebrafish

Scientific reports, 2019-04, Vol.9 (1), p.5440, Article 5440

2019

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Phenotypical microRNA screen reveals a noncanonical role of CDK2 in regulating neutrophil migration

Proceedings of the National Academy of Sciences - PNAS, 2019-09, Vol.116 (37), p.18561-18570

2019

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A mechanistic integrative computational model of macrophage polarization: Implications in human pathophysiology

PLoS computational biology, 2019-11, Vol.15 (11), p.e1007468-e1007468

2019

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Automatic wavelet-based 3D nuclei segmentation and analysis for multicellular embryo quantification

Scientific reports, 2021-05, Vol.11 (1), p.9847-9847, Article 9847

2021

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Early radial positional information in the cochlea is optimized by a precise linear BMP gradient and enhanced by SOX2

Scientific reports, 2023-05, Vol.13 (1), p.8567-8567, Article 8567

2023

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Neural control of body-plan axis in regenerating planaria

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006904-e1006904

2019

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Coordinating cell polarization and morphogenesis through mechanical feedback

PLoS computational biology, 2021-01, Vol.17 (1), p.e1007971-e1007971

2021

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A multiscale model via single-cell transcriptomics reveals robust patterning mechanisms during early mammalian embryo development

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008571-e1008571

2021

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Systems biology derived source-sink mechanism of BMP gradient formation

eLife, 2017-08, Vol.6

2017

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The extracellular regulation of bone morphogenetic protein signaling

Development (Cambridge), 2009-11, Vol.136 (22), p.3715-3728

2009

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Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression

PLoS computational biology, 2017-02, Vol.13 (2), p.e1005285-e1005285

2017

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Model-driven discovery of calcium-related protein-phosphatase inhibition in plant guard cell signaling

PLoS computational biology, 2019-10, Vol.15 (10), p.e1007429-e1007429

2019

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Multiple morphogens and rapid elongation promote segmental patterning during development

PLoS computational biology, 2021-06, Vol.17 (6), p.e1009077-e1009077

2021

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Evaluation of BMP-mediated patterning in a 3D mathematical model of the zebrafish blastula embryo

Journal of mathematical biology, 2020-01, Vol.80 (1-2), p.505-520

2020

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Model-based analysis for qualitative data: an application in Drosophila germline stem cell regulation

PLoS computational biology, 2014-03, Vol.10 (3), p.e1003498-e1003498

2014

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LobeFinder: A Convex Hull-Based Method for Quantitative Boundary Analyses of Lobed Plant Cells

Plant physiology (Bethesda), 2016-08, Vol.171 (4), p.2331-2342

2016

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Mathematical model studies of the comprehensive generation of major and minor phyllotactic patterns in plants with a predominant focus on orixate phyllotaxis

PLoS computational biology, 2019-06, Vol.15 (6), p.e1007044-e1007044

2019

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Quantitative model analysis with diverse biological data: Applications in developmental pattern formation

Methods (San Diego, Calif.), 2013-07, Vol.62 (1), p.56-67

2013

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Combinatorial mathematical modelling approaches to interrogate rear retraction dynamics in 3D cell migration

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008213-e1008213

2021

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Mechanical feedback coordinates cell wall expansion and assembly in yeast mating morphogenesis

PLoS computational biology, 2018-01, Vol.14 (1), p.e1005940-e1005940

2018

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Mechanisms of scaling in pattern formation

Label-Free Imaging of Lipid-Droplet Intracellular Motion in Early Drosophila Embryos Using Femtosecond-Stimulated Raman Loss Microscopy

Diversity and robustness of bone morphogenetic protein pattern formation

Computational modeling of TGF-β2:TβRI:TβRII receptor complex assembly as mediated by the TGF-β coreceptor betaglycan

Heterodimer-heterotetramer formation mediates enhanced sensor activity in a biophysical model for BMP signaling

Scale invariance of BMP signaling gradients in zebrafish

Phenotypical microRNA screen reveals a noncanonical role of CDK2 in regulating neutrophil migration

A mechanistic integrative computational model of macrophage polarization: Implications in human pathophysiology

Automatic wavelet-based 3D nuclei segmentation and analysis for multicellular embryo quantification

Early radial positional information in the cochlea is optimized by a precise linear BMP gradient and enhanced by SOX2

Neural control of body-plan axis in regenerating planaria

Coordinating cell polarization and morphogenesis through mechanical feedback

A multiscale model via single-cell transcriptomics reveals robust patterning mechanisms during early mammalian embryo development

Systems biology derived source-sink mechanism of BMP gradient formation

The extracellular regulation of bone morphogenetic protein signaling

Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression

Model-driven discovery of calcium-related protein-phosphatase inhibition in plant guard cell signaling

Multiple morphogens and rapid elongation promote segmental patterning during development

Evaluation of BMP-mediated patterning in a 3D mathematical model of the zebrafish blastula embryo

Model-based analysis for qualitative data: an application in Drosophila germline stem cell regulation

LobeFinder: A Convex Hull-Based Method for Quantitative Boundary Analyses of Lobed Plant Cells

Mathematical model studies of the comprehensive generation of major and minor phyllotactic patterns in plants with a predominant focus on orixate phyllotaxis

Quantitative model analysis with diverse biological data: Applications in developmental pattern formation

Combinatorial mathematical modelling approaches to interrogate rear retraction dynamics in 3D cell migration

Mechanical feedback coordinates cell wall expansion and assembly in yeast mating morphogenesis

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