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Spatio-temporal model of endogenous ROS and raft-dependent WNT/beta-catenin signaling driving cell fate commitment in human neural progenitor cells

PLoS computational biology, 2015-03, Vol.11 (3), p.e1004106-e1004106

2015

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Relating simulation studies by provenance—Developing a family of Wnt signaling models

PLoS computational biology, 2021-08, Vol.17 (8), p.e1009227-e1009227

2021

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Potential based, spatial simulation of dynamically nested particles

BMC bioinformatics, 2019-11, Vol.20 (1), p.607-16, Article 607

2019

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VPMBench: a test bench for variant prioritization methods

BMC bioinformatics, 2021-11, Vol.22 (Suppl 5), p.1-543, Article 543

2021

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Implications of different membrane compartmentalization models in particle-based in silico studies

Royal Society open science, 2023-07, Vol.10 (7), p.221177-221177

2023

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Long-term stimulation with alternating electric fields modulates the differentiation and mineralization of human pre-osteoblasts

Frontiers in physiology, 2022-09, Vol.13, p.965181-965181

2022

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Receptor/Raft Ratio Is a Determinant for LRP6 Phosphorylation and WNT/β-Catenin Signaling

Frontiers in cell and developmental biology, 2021-08, Vol.9, p.706731-706731

2021

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ML-Space: Hybrid Spatial Gillespie and Particle Simulation of Multi-Level Rule-Based Models in Cell Biology

IEEE/ACM transactions on computational biology and bioinformatics, 2017-11, Vol.14 (6), p.1339-1349

2017

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Using a Digital Twin of an Electrical Stimulation Device to Monitor and Control the Electrical Stimulation of Cells in vitro

Frontiers in bioengineering and biotechnology, 2021-12, Vol.9, p.765516-765516

2021

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Composing problem solvers for simulation experimentation: a case study on steady state estimation

PloS one, 2014-04, Vol.9 (4), p.e91948-e91948

2014

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A Model-Driven Approach for Conducting Simulation Experiments

Applied sciences, 2022-08, Vol.12 (16), p.7977

2022

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Exploring the mechanistic and temporal regulation of LRP6 endocytosis in canonical WNT signaling

Journal of cell science, 2020-08, Vol.133 (15)

2020

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Elucidating the sources of β-catenin dynamics in human neural progenitor cells

PloS one, 2012-08, Vol.7 (8), p.e42792-e42792

2012

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Synchronous speculative simulation of tightly coupled agents in continuous time on CPUs and GPUs

Simulation (San Diego, Calif.), 2024-01, Vol.100 (1), p.5-21

2024

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ROS Dependent Wnt/β-Catenin Pathway and Its Regulation on Defined Micro-Pillars-A Combined In Vitro and In Silico Study

Cells (Basel, Switzerland), 2020-07, Vol.9 (8), p.1784

2020

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Rule-based multi-level modeling of cell biological systems

BMC systems biology, 2011-10, Vol.5 (179), p.166-166

2011

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SESSL: A domain-specific language for simulation experiments

ACM transactions on modeling and computer simulation, 2014-02, Vol.24 (2), p.1-25

2014

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Creating PROV-DM Graphs from Model Databases

2022 Winter Simulation Conference (WSC), 2022, p.2118-2129

2022

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Towards a PROV Ontology for Simulation Models

Provenance and Annotation of Data and Processes, p.192-195

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Modelling and simulating decision processes of linked lives: An approach based on concurrent processes and stochastic race

Population studies, 2017-10, Vol.71 (sup1), p.69-83

2017

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Exploring the performance of spatial stochastic simulation algorithms

Journal of computational physics, 2011-04, Vol.230 (7), p.2562-2574

2011

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ODD+P: COMPLEMENTING THE ODD PROTOCOL WITH PROVENANCE INFORMATION

2018 Winter Simulation Conference (WSC), 2018, p.727-738

2018

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Seamless Simulation-Based Verification and Validation of Event-Driven Software Systems

2022 Winter Simulation Conference (WSC), 2022, p.2130-2141

2022

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Agent-Based Simulation Models in Fisheries Science

Reviews in fisheries science, 2023-07, Vol.31 (3), p.372-395

2023

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Conducting systematic, partly automated simulation studies – Unde Venis et Quo Vadis

AIP Conference Proceedings, 2020, Vol.2293 (1)

2020

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Spatio-temporal model of endogenous ROS and raft-dependent WNT/beta-catenin signaling driving cell fate commitment in human neural progenitor cells

Relating simulation studies by provenance—Developing a family of Wnt signaling models

Potential based, spatial simulation of dynamically nested particles

VPMBench: a test bench for variant prioritization methods

Implications of different membrane compartmentalization models in particle-based in silico studies

Long-term stimulation with alternating electric fields modulates the differentiation and mineralization of human pre-osteoblasts

Receptor/Raft Ratio Is a Determinant for LRP6 Phosphorylation and WNT/β-Catenin Signaling

ML-Space: Hybrid Spatial Gillespie and Particle Simulation of Multi-Level Rule-Based Models in Cell Biology

Using a Digital Twin of an Electrical Stimulation Device to Monitor and Control the Electrical Stimulation of Cells in vitro

Composing problem solvers for simulation experimentation: a case study on steady state estimation

A Model-Driven Approach for Conducting Simulation Experiments

Exploring the mechanistic and temporal regulation of LRP6 endocytosis in canonical WNT signaling

Elucidating the sources of β-catenin dynamics in human neural progenitor cells

Synchronous speculative simulation of tightly coupled agents in continuous time on CPUs and GPUs

ROS Dependent Wnt/β-Catenin Pathway and Its Regulation on Defined Micro-Pillars-A Combined In Vitro and In Silico Study

Rule-based multi-level modeling of cell biological systems

SESSL: A domain-specific language for simulation experiments

Creating PROV-DM Graphs from Model Databases

Towards a PROV Ontology for Simulation Models

Modelling and simulating decision processes of linked lives: An approach based on concurrent processes and stochastic race

Exploring the performance of spatial stochastic simulation algorithms

ODD+P: COMPLEMENTING THE ODD PROTOCOL WITH PROVENANCE INFORMATION

Seamless Simulation-Based Verification and Validation of Event-Driven Software Systems

Agent-Based Simulation Models in Fisheries Science

Conducting systematic, partly automated simulation studies – Unde Venis et Quo Vadis

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