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Engineering Stability, Viscosity, and Immunogenicity of Antibodies by Computational Design

Journal of pharmaceutical sciences, 2020-05, Vol.109 (5), p.1631-1651

2020

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Effects of Syringe Material and Silicone Oil Lubrication on the Stability of Pharmaceutical Proteins

Journal of pharmaceutical sciences, 2015-02, Vol.104 (2), p.527-535

2015

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Analytical Method for Experimental Validation of Computer-Designed Antibody

Methods in molecular biology (Clifton, N.J.), 2023, Vol.2552, p.409

2023

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Addition of arginine hydrochloride and proline to the culture medium enhances recombinant protein expression in Brevibacillus choshinensis: The case of RBD of SARS-CoV-2 spike protein and its antibody

Protein expression and purification, 2022-06, Vol.194, p.106075-106075, Article 106075

2022

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Thermodynamic and molecular dynamic insights into how fusion influences peptide-tag recognition of an antibody

Scientific reports, 2024-04, Vol.14 (1), p.8685-8685

2024

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Glycosylation of IgG-Fc: a molecular perspective

International immunology, 2017-07, Vol.29 (7), p.311-317

2017

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Effects of subclass change on the structural stability of chimeric, humanized, and human antibodies under thermal stress

Protein science, 2013-11, Vol.22 (11), p.1542-1551

2013

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Phospholipid Membrane Fluidity Alters Ligand Binding Activity of a G Protein-Coupled Receptor by Shifting the Conformational Equilibrium

Biochemistry (Easton), 2019-02, Vol.58 (6), p.504-508

2019

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Microsecond molecular dynamics suggest that a non-synonymous mutation, frequently observed in patients with mild symptoms in Tokyo, alters dynamics of the SARS-CoV-2 main protease

Biophysics and Physicobiology, 2021, Vol.18, pp.215-222

2021

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Delicate balance among thermal stability, binding affinity, and conformational space explored by single-domain VHH antibodies

Scientific reports, 2021-10, Vol.11 (1), p.20624-20624, Article 20624

2021

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Exploring designability of electrostatic complementarity at an antigen-antibody interface directed by mutagenesis, biophysical analysis, and molecular dynamics simulations

Scientific reports, 2019-03, Vol.9 (1), p.4482, Article 4482

2019

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How the protonation state of a phosphorylated amino acid governs molecular recognition: insights from classical molecular dynamics simulations

FEBS letters, 2020-03, Vol.594 (5), p.903-912

2020

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Discovery of chemical probes that suppress Wnt/β‐catenin signaling through high‐throughput screening

Cancer science, 2020-03, Vol.111 (3), p.783-794

2020

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Thermodynamic and computational analyses reveal the functional roles of the galloyl group of tea catechins in molecular recognition

PloS one, 2018-10, Vol.13 (10), p.e0204856-e0204856

2018

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Design strategy for serine hydroxymethyltransferase probes based on retro-aldol-type reaction

Nature communications, 2019-02, Vol.10 (1), p.876-876, Article 876

2019

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Development of a high-throughput method to screen novel antiviral materials

PloS one, 2022-04, Vol.17 (4), p.e0266474-e0266474

2022

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Elaboration of Non-naturally Occurring Helical Tripeptides as p53–MDM2/MDMX Interaction Inhibitors

Chemical and Pharmaceutical Bulletin, 2021/07/01, Vol.69(7), pp.681-692

2021

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Next Generation Drying Technologies for Pharmaceutical Applications

Journal of pharmaceutical sciences, 2014-09, Vol.103 (9), p.2673-2695

2014

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Structural basis for self-assembly of a cytolytic pore lined by protein and lipid

Nature communications, 2015-02, Vol.6 (1), p.6337-6337, Article 6337

2015

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The transcriptional corepressor CtBP2 serves as a metabolite sensor orchestrating hepatic glucose and lipid homeostasis

Nature communications, 2021-11, Vol.12 (1), p.6315-6315, Article 6315

2021

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Development of biparatopic bispecific antibody possessing tetravalent scFv-Fc capable of binding to ROBO1 expressed in hepatocellular carcinoma cells

Journal of biochemistry (Tokyo), 2021-08, Vol.170 (2), p.307

2021

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Epitope-dependent thermodynamic signature of single-domain antibodies against hen egg lysozyme

Journal of biochemistry (Tokyo), 2021-11, Vol.170 (5), p.623

2021

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Author Correction: Structure-based design and discovery of novel anti-tissue factor antibodies with cooperative double-point mutations, using interaction analysis

Scientific reports, 2021-09, Vol.11 (1), p.18153-18153, Article 18153

2021

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Novel neutralizing human monoclonal antibodies against tetanus neurotoxin

Scientific reports, 2021-06, Vol.11 (1), p.12134-12134, Article 12134

2021

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Peptoid-based reprogrammable template for cell-permeable inhibitors of protein-protein interactions

Chemical science (Cambridge), 2021-10, Vol.12 (4), p.13292-133

2021

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Engineering Stability, Viscosity, and Immunogenicity of Antibodies by Computational Design

Effects of Syringe Material and Silicone Oil Lubrication on the Stability of Pharmaceutical Proteins

Analytical Method for Experimental Validation of Computer-Designed Antibody

Addition of arginine hydrochloride and proline to the culture medium enhances recombinant protein expression in Brevibacillus choshinensis: The case of RBD of SARS-CoV-2 spike protein and its antibody

Thermodynamic and molecular dynamic insights into how fusion influences peptide-tag recognition of an antibody

Glycosylation of IgG-Fc: a molecular perspective

Effects of subclass change on the structural stability of chimeric, humanized, and human antibodies under thermal stress

Phospholipid Membrane Fluidity Alters Ligand Binding Activity of a G Protein-Coupled Receptor by Shifting the Conformational Equilibrium

Microsecond molecular dynamics suggest that a non-synonymous mutation, frequently observed in patients with mild symptoms in Tokyo, alters dynamics of the SARS-CoV-2 main protease

Delicate balance among thermal stability, binding affinity, and conformational space explored by single-domain VHH antibodies

Exploring designability of electrostatic complementarity at an antigen-antibody interface directed by mutagenesis, biophysical analysis, and molecular dynamics simulations

How the protonation state of a phosphorylated amino acid governs molecular recognition: insights from classical molecular dynamics simulations

Discovery of chemical probes that suppress Wnt/β‐catenin signaling through high‐throughput screening

Thermodynamic and computational analyses reveal the functional roles of the galloyl group of tea catechins in molecular recognition

Design strategy for serine hydroxymethyltransferase probes based on retro-aldol-type reaction

Development of a high-throughput method to screen novel antiviral materials

Elaboration of Non-naturally Occurring Helical Tripeptides as p53–MDM2/MDMX Interaction Inhibitors

Next Generation Drying Technologies for Pharmaceutical Applications

Structural basis for self-assembly of a cytolytic pore lined by protein and lipid

The transcriptional corepressor CtBP2 serves as a metabolite sensor orchestrating hepatic glucose and lipid homeostasis

Development of biparatopic bispecific antibody possessing tetravalent scFv-Fc capable of binding to ROBO1 expressed in hepatocellular carcinoma cells

Epitope-dependent thermodynamic signature of single-domain antibodies against hen egg lysozyme

Author Correction: Structure-based design and discovery of novel anti-tissue factor antibodies with cooperative double-point mutations, using interaction analysis

Novel neutralizing human monoclonal antibodies against tetanus neurotoxin

Peptoid-based reprogrammable template for cell-permeable inhibitors of protein-protein interactions

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