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Transcription factor-binding k-mer analysis clarifies the cell type dependency of binding specificities and cis-regulatory SNPs in humans

BMC genomics, 2023-10, Vol.24 (1), p.1-597, Article 597

2023

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CCPLS reveals cell-type-specific spatial dependence of transcriptomes in single cells

Bioinformatics (Oxford, England), 2022-10, Vol.38 (21), p.4868-4877

2022

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Robustness and Compensation of Information Transmission of Signaling Pathways

Science (American Association for the Advancement of Science), 2013-08, Vol.341 (6145), p.558-561

2013

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Identifying potential regulators of JAGGED1 expression in portal mesenchymal cells

BMC research notes, 2022-05, Vol.15 (1), p.172-172, Article 172

2022

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Transomics analysis reveals allosteric and gene regulation axes for altered hepatic glucose-responsive metabolism in obesity

Science signaling, 2020-12, Vol.13 (660)

2020

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DNA hypomethylation characterizes genes encoding tissue-dominant functional proteins in liver and skeletal muscle

Scientific reports, 2023-11, Vol.13 (1), p.19118-19118, Article 19118

2023

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In vivo transomic analyses of glucose-responsive metabolism in skeletal muscle reveal core differences between the healthy and obese states

Scientific reports, 2022-08, Vol.12 (1), p.13719-13719, Article 13719

2022

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Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling

Cell reports (Cambridge), 2016-06, Vol.15 (11), p.2524-2535

2016

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System identification of signaling dependent gene expression with different time-scale data

PLoS computational biology, 2017-12, Vol.13 (12), p.e1005913-e1005913

2017

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Temporal decoding of MAP kinase and CREB phosphorylation by selective immediate early gene expression

PloS one, 2013-03, Vol.8 (3), p.e57037

2013

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Laguerre Filter Analysis with Partial Least Square Regression Reveals a Priming Effect of ERK and CREB on c-FOS Induction

PloS one, 2016-08, Vol.11 (8), p.e0160548-e0160548

2016

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Trans-omic analysis reveals obesity-associated dysregulation of inter-organ metabolic cycles between the liver and skeletal muscle

iScience, 2021-03, Vol.24 (3), p.102217-102217, Article 102217

2021

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CCPLS reveals cell-type-specific spatial dependence of transcriptomes in single cells

Bioinformatics (Oxford, England), 2023-02, Vol.39 (2)

2023

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Stability of RNA sequences derived from the coronavirus genome in human cells

Biochemical and biophysical research communications, 2020-07, Vol.527 (4), p.993-999

2020

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The RNA-binding protein Msi2 regulates autophagy during myogenic differentiation

Life science alliance, 2024-05, Vol.7 (5), p.e202302016

2024

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Temporal Decoding of MAP Kinase and CREB Phosphorylation by Selective Immediate Early Gene Expression. e57037

PloS one, 2013-03, Vol.8 (3)

2013

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The prognostic value of the prognostic nutritional index and inflammation-based markers in obstructive colorectal cancer

Surgery today (Tokyo, Japan), 2020-10, Vol.50 (10), p.1272-1281

2020

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Low Geriatric Nutritional Risk Index (GNRI) Predicts Poorer Survival in Patients with Obstructive Colorectal Cancer Who Had a Self-Expandable Metallic Stent (SEMS) Inserted as a Bridge to Curative Surgery

Journal of the anus, rectum and colon, 2023-04, Vol.7 (2), p.63-73, Article 2022-053

2023

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A longer interval after stenting compromises the short- and long-term outcomes after curative surgery for obstructive colorectal cancer

Surgery today (Tokyo, Japan), 2022-04, Vol.52 (4), p.681-689

2022

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Impact of Sarcopenia on Postoperative Complications in Obstructive Colorectal Cancer Patients Who Received Stenting as a Bridge to Curative Surgery

Journal of the Anus, Rectum and Colon, 2022/01/28, Vol.6(1), pp.40-51

2022

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The Controlling Nutritional Status (CONUT) Score as a prognostic factor for obstructive colorectal cancer patients received stenting as a bridge to curative surgery

Surgery today (Tokyo, Japan), 2021-01, Vol.51 (1), p.144-152

2021

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Preoperative change of modified Glasgow prognostic score after stenting predicts the long-term outcomes of obstructive colorectal cancer

Surgery today (Tokyo, Japan), 2020-03, Vol.50 (3), p.232-239

2020

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Protective effect of the oral administration of cystine and theanine on oxaliplatin-induced peripheral neuropathy: a pilot randomized trial

International journal of clinical oncology, 2020-10, Vol.25 (10), p.1814-1821

2020

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A decreased preoperative platelet-to-lymphocyte ratio, systemic immune-inflammation index, and pan-immune-inflammation value are associated with the poorer survival of patients with a stent inserted as a bridge to curative surgery for obstructive colorectal cancer

Surgery today (Tokyo, Japan), 2023-04, Vol.53 (4), p.409-419

2023

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Prognostic Significance of Preoperative Globulin-to-albumin Ratio in Obstructive Colorectal Cancer Patients Who Underwent Curative Surgery after Stenting

Journal of the Anus, Rectum and Colon, 2021/10/28, Vol.5(4), pp.366-375

2021

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Transcription factor-binding k-mer analysis clarifies the cell type dependency of binding specificities and cis-regulatory SNPs in humans

CCPLS reveals cell-type-specific spatial dependence of transcriptomes in single cells

Robustness and Compensation of Information Transmission of Signaling Pathways

Identifying potential regulators of JAGGED1 expression in portal mesenchymal cells

Transomics analysis reveals allosteric and gene regulation axes for altered hepatic glucose-responsive metabolism in obesity

DNA hypomethylation characterizes genes encoding tissue-dominant functional proteins in liver and skeletal muscle

In vivo transomic analyses of glucose-responsive metabolism in skeletal muscle reveal core differences between the healthy and obese states

Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling

System identification of signaling dependent gene expression with different time-scale data

Temporal decoding of MAP kinase and CREB phosphorylation by selective immediate early gene expression

Laguerre Filter Analysis with Partial Least Square Regression Reveals a Priming Effect of ERK and CREB on c-FOS Induction

Trans-omic analysis reveals obesity-associated dysregulation of inter-organ metabolic cycles between the liver and skeletal muscle

CCPLS reveals cell-type-specific spatial dependence of transcriptomes in single cells

Stability of RNA sequences derived from the coronavirus genome in human cells

The RNA-binding protein Msi2 regulates autophagy during myogenic differentiation

Temporal Decoding of MAP Kinase and CREB Phosphorylation by Selective Immediate Early Gene Expression. e57037

The prognostic value of the prognostic nutritional index and inflammation-based markers in obstructive colorectal cancer

Low Geriatric Nutritional Risk Index (GNRI) Predicts Poorer Survival in Patients with Obstructive Colorectal Cancer Who Had a Self-Expandable Metallic Stent (SEMS) Inserted as a Bridge to Curative Surgery

A longer interval after stenting compromises the short- and long-term outcomes after curative surgery for obstructive colorectal cancer

Impact of Sarcopenia on Postoperative Complications in Obstructive Colorectal Cancer Patients Who Received Stenting as a Bridge to Curative Surgery

The Controlling Nutritional Status (CONUT) Score as a prognostic factor for obstructive colorectal cancer patients received stenting as a bridge to curative surgery

Preoperative change of modified Glasgow prognostic score after stenting predicts the long-term outcomes of obstructive colorectal cancer

Protective effect of the oral administration of cystine and theanine on oxaliplatin-induced peripheral neuropathy: a pilot randomized trial

A decreased preoperative platelet-to-lymphocyte ratio, systemic immune-inflammation index, and pan-immune-inflammation value are associated with the poorer survival of patients with a stent inserted as a bridge to curative surgery for obstructive colorectal cancer

Prognostic Significance of Preoperative Globulin-to-albumin Ratio in Obstructive Colorectal Cancer Patients Who Underwent Curative Surgery after Stenting

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