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Comprehensive literature review and statistical considerations for microarray meta-analysis

Nucleic acids research, 2012-05, Vol.40 (9), p.3785-3799

2012

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Improved identification of concordant and discordant gene expression signatures using an updated rank-rank hypergeometric overlap approach

Scientific reports, 2018-06, Vol.8 (1), p.9588-11, Article 9588

2018

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Effects of aging on circadian patterns of gene expression in the human prefrontal cortex

Proceedings of the National Academy of Sciences - PNAS, 2016-01, Vol.113 (1), p.206-211

2016

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Comprehensive literature review and statistical considerations for GWAS meta-analysis

Nucleic acids research, 2012-05, Vol.40 (9), p.3777-3784

2012

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MicroRNA Expression Profiling of Thyroid Tumors: Biological Significance and Diagnostic Utility

The journal of clinical endocrinology and metabolism, 2008-05, Vol.93 (5), p.1600-1608

2008

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Meta-analysis methods for combining multiple expression profiles: comparisons, statistical characterization and an application guideline

BMC bioinformatics, 2013-12, Vol.14 (1), p.368-368, Article 368

2013

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Combined systemic elimination of MET and epidermal growth factor receptor signaling completely abolishes liver regeneration and leads to liver decompensation

Hepatology (Baltimore, Md.), 2016-11, Vol.64 (5), p.1711-1724

2016

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MetaKTSP: a meta-analytic top scoring pair method for robust cross-study validation of omics prediction analysis

Bioinformatics, 2016-07, Vol.32 (13), p.1966-1973

2016

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Twelve-hour rhythms in transcript expression within the human dorsolateral prefrontal cortex are altered in schizophrenia

PLoS biology, 2023-01, Vol.21 (1), p.e3001688

2023

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Invasive lobular and ductal breast carcinoma differ in immune response, protein translation efficiency and metabolism

Scientific reports, 2018-05, Vol.8 (1), p.7205-11, Article 7205

2018

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Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data

Nucleic acids research, 2016-03, Vol.44 (5), p.e47-e47

2016

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Astrocyte Molecular Clock Function in the Nucleus Accumbens Is Important for Reward-Related Behavior

Biological psychiatry (1969), 2022-07, Vol.92 (1), p.68-80

2022

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Systems approach for congruence and selection of cancer models towards precision medicine

PLoS computational biology, 2024-01, Vol.20 (1), p.e1011754

2024

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Sustained Molecular Pathology Across Episodes and Remission in Major Depressive Disorder

Biological psychiatry (1969), 2018-01, Vol.83 (1), p.81-89

2018

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A conserved BDNF, glutamate- and GABA-enriched gene module related to human depression identified by coexpression meta-analysis and DNA variant genome-wide association studies

PloS one, 2014-03, Vol.9 (3), p.e90980-e90980

2014

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Evaluation and comparison of gene clustering methods in microarray analysis

Bioinformatics, 2006-10, Vol.22 (19), p.2405-2412

2006

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Diurnal rhythms across the human dorsal and ventral striatum

Proceedings of the National Academy of Sciences - PNAS, 2021-01, Vol.118 (2), p.1-11

2021

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Detecting disease-associated genes with confounding variable adjustment and the impact on genomic meta-analysis: with application to major depressive disorder

BMC bioinformatics, 2012-03, Vol.13 (1), p.52-52, Article 52

2012

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ESR1 mutant breast cancers show elevated basal cytokeratins and immune activation

Nature communications, 2022-04, Vol.13 (1), p.2011-2011, Article 2011

2022

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Brain region- and sex-specific transcriptional profiles of microglia

Frontiers in psychiatry, 2022-08, Vol.13, p.945548-945548

2022

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A combined molecular‐pathologic score improves risk stratification of thyroid papillary microcarcinoma

Cancer, 2012-04, Vol.118 (8), p.2069-2077

2012

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Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

Journal for immunotherapy of cancer, 2019-10, Vol.7 (1), p.265-265, Article 265

2019

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Transcriptomic and genomic analysis of human hepatocellular carcinomas and hepatoblastomas

Hepatology (Baltimore, Md.), 2006-10, Vol.44 (4), p.1012-1024

2006

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Single nuclei transcriptomics in human and non-human primate striatum in opioid use disorder

Nature communications, 2024-01, Vol.15 (1), p.878-878, Article 878

2024

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Age-Related Gene Expression in the Frontal Cortex Suggests Synaptic Function Changes in Specific Inhibitory Neuron Subtypes

Frontiers in aging neuroscience, 2017-05, Vol.9, p.162-162

2017

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Comprehensive literature review and statistical considerations for microarray meta-analysis

Improved identification of concordant and discordant gene expression signatures using an updated rank-rank hypergeometric overlap approach

Effects of aging on circadian patterns of gene expression in the human prefrontal cortex

Comprehensive literature review and statistical considerations for GWAS meta-analysis

MicroRNA Expression Profiling of Thyroid Tumors: Biological Significance and Diagnostic Utility

Meta-analysis methods for combining multiple expression profiles: comparisons, statistical characterization and an application guideline

Combined systemic elimination of MET and epidermal growth factor receptor signaling completely abolishes liver regeneration and leads to liver decompensation

MetaKTSP: a meta-analytic top scoring pair method for robust cross-study validation of omics prediction analysis

Twelve-hour rhythms in transcript expression within the human dorsolateral prefrontal cortex are altered in schizophrenia

Invasive lobular and ductal breast carcinoma differ in immune response, protein translation efficiency and metabolism

Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data

Astrocyte Molecular Clock Function in the Nucleus Accumbens Is Important for Reward-Related Behavior

Systems approach for congruence and selection of cancer models towards precision medicine

Sustained Molecular Pathology Across Episodes and Remission in Major Depressive Disorder

A conserved BDNF, glutamate- and GABA-enriched gene module related to human depression identified by coexpression meta-analysis and DNA variant genome-wide association studies

Evaluation and comparison of gene clustering methods in microarray analysis

Diurnal rhythms across the human dorsal and ventral striatum

Detecting disease-associated genes with confounding variable adjustment and the impact on genomic meta-analysis: with application to major depressive disorder

ESR1 mutant breast cancers show elevated basal cytokeratins and immune activation

Brain region- and sex-specific transcriptional profiles of microglia

A combined molecular‐pathologic score improves risk stratification of thyroid papillary microcarcinoma

Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors

Transcriptomic and genomic analysis of human hepatocellular carcinomas and hepatoblastomas

Single nuclei transcriptomics in human and non-human primate striatum in opioid use disorder

Age-Related Gene Expression in the Frontal Cortex Suggests Synaptic Function Changes in Specific Inhibitory Neuron Subtypes

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