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CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data

Genome Biology, 2017-03, Vol.18 (1), p.59-59, Article 59

2017

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Oscillatory brain activity in spontaneous and induced sleep stages in flies

Nature communications, 2017-11, Vol.8 (1), p.1815-15, Article 1815

2017

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Maternal iron deficiency perturbs embryonic cardiovascular development in mice

Nature communications, 2021-06, Vol.12 (1), p.3447-17, Article 3447

2021

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Fin-tail coordination during escape and predatory behavior in larval zebrafish

PloS one, 2012-02, Vol.7 (2), p.e32295-e32295

2012

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Benchmarking the Effectiveness and Accuracy of Multiple Mitochondrial DNA Variant Callers: Practical Implications for Clinical Application

Frontiers in genetics, 2022-03, Vol.13, p.692257-692257

2022

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Scalability and Validation of Big Data Bioinformatics Software

Computational and structural biotechnology journal, 2017-01, Vol.15, p.379-386

2017

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Acute control of the sleep switch in Drosophila reveals a role for gap junctions in regulating behavioral responsiveness

eLife, 2018-08, Vol.7

2018

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Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads [version 1; peer review: 2 approved]

F1000 research, 2019, Vol.8, p.1587

2019

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Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads [version 2; peer review: 2 approved]

F1000 research, 2019-01, Vol.8, p.1587-1587

2019

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Using Drosophila to Understand General Anesthesia: From Synapses to Behavior

Methods in enzymology, 2018, Vol.602, p.153-176

2018

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Neural Ensemble Fragmentation in the Anesthetized Drosophila Brain

The Journal of neuroscience, 2023-04, Vol.43 (14), p.2537-2551

2023

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Long Noncoding RNA-Directed Epigenetic Regulation of Gene Expression Is Associated With Anxiety-like Behavior in Mice

Biological psychiatry (1969), 2015-12, Vol.78 (12), p.848-859

2015

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Spliceogen: an integrative, scalable tool for the discovery of splice-altering variants

Bioinformatics, 2019-11, Vol.35 (21), p.4405-4407

2019

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Whole-Brain Calcium Imaging in Drosophila during Sleep and Wake

Cold Spring Harbor protocols, 2024-09, Vol.2024 (9), p.pdb.prot108419

2024

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Whole-Brain Electrophysiology and Calcium Imaging in Drosophila during Sleep and Wake

Cold Spring Harbor protocols, 2024-09, Vol.2024 (9), p.pdb.top108394

2024

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Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud

Bioinformatics (Oxford, England), 2017-03, Vol.33 (5), p.767-769

2017

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Syntaxin1A Neomorphic Mutations Promote Rapid Recovery from Isoflurane Anesthesia in Drosophila melanogaster

Anesthesiology (Philadelphia), 2019-09, Vol.131 (3), p.555-568

2019

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Identification of clinically actionable variants from genome sequencing of families with congenital heart disease

Genetics in medicine, 2019-05, Vol.21 (5), p.1111-1120

2019

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Abstract 11949: Disease-Specific and Comorbidity-Related Polygenic Risk in Spontaneous Coronary Artery Dissection

Circulation (New York, N.Y.), 2021-11, Vol.144 (Suppl_1)

2021

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Insights into the genetic architecture underlying complex, critical congenital heart disease

The American heart journal, 2022-12, Vol.254, p.166-171

2022

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A Sleep/Wake Circuit Controls Isoflurane Sensitivity in Drosophila

Current biology, 2013-04, Vol.23 (7), p.594-598

2013

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Transient Dysregulation of Dopamine Signaling in a Developing Drosophila Arousal Circuit Permanently Impairs Behavioral Responsiveness in Adults

Frontiers in psychiatry, 2017-02, Vol.8, p.22-22

2017

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Polygenic Risk in Families With Spontaneous Coronary Artery Dissection

JAMA cardiology, 2024-03, Vol.9 (3), p.254

2024

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Exploring the Genetic Architecture of Spontaneous Coronary Artery Dissection Using Whole-Genome Sequencing

Circulation. Genomic and precision medicine, 2022-08, Vol.15 (4), p.e003527-e003527

2022

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A Cloud-Based Framework for Applying Metamorphic Testing to a Bioinformatics Pipeline

2016 IEEE/ACM 1st International Workshop on Metamorphic Testing (MET), 2016, p.33-36

2016

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CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data

Oscillatory brain activity in spontaneous and induced sleep stages in flies

Maternal iron deficiency perturbs embryonic cardiovascular development in mice

Fin-tail coordination during escape and predatory behavior in larval zebrafish

Benchmarking the Effectiveness and Accuracy of Multiple Mitochondrial DNA Variant Callers: Practical Implications for Clinical Application

Scalability and Validation of Big Data Bioinformatics Software

Acute control of the sleep switch in Drosophila reveals a role for gap junctions in regulating behavioral responsiveness

Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads [version 1; peer review: 2 approved]

Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads [version 2; peer review: 2 approved]

Using Drosophila to Understand General Anesthesia: From Synapses to Behavior

Neural Ensemble Fragmentation in the Anesthetized Drosophila Brain

Long Noncoding RNA-Directed Epigenetic Regulation of Gene Expression Is Associated With Anxiety-like Behavior in Mice

Spliceogen: an integrative, scalable tool for the discovery of splice-altering variants

Whole-Brain Calcium Imaging in Drosophila during Sleep and Wake

Whole-Brain Electrophysiology and Calcium Imaging in Drosophila during Sleep and Wake

Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud

Syntaxin1A Neomorphic Mutations Promote Rapid Recovery from Isoflurane Anesthesia in Drosophila melanogaster

Identification of clinically actionable variants from genome sequencing of families with congenital heart disease

Abstract 11949: Disease-Specific and Comorbidity-Related Polygenic Risk in Spontaneous Coronary Artery Dissection

Insights into the genetic architecture underlying complex, critical congenital heart disease

A Sleep/Wake Circuit Controls Isoflurane Sensitivity in Drosophila

Transient Dysregulation of Dopamine Signaling in a Developing Drosophila Arousal Circuit Permanently Impairs Behavioral Responsiveness in Adults

Polygenic Risk in Families With Spontaneous Coronary Artery Dissection

Exploring the Genetic Architecture of Spontaneous Coronary Artery Dissection Using Whole-Genome Sequencing

A Cloud-Based Framework for Applying Metamorphic Testing to a Bioinformatics Pipeline

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