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Comparison of detection methods and genome quality when quantifying nuclear mitochondrial insertions in vertebrate genomes

Frontiers in genetics, 2022-11, Vol.13, p.984513-984513

2022

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Most partial domains in proteins are alignment and annotation artifacts

Genome Biology, 2015-05, Vol.16 (1), p.99-99, Article 99

2015

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Editorial: Gene Regulation as a Driver of Adaptation and Speciation

Frontiers in genetics, 2021-11, Vol.12, p.793933-793933

2021

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MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database

Frontiers in plant science, 2020-10, Vol.11, p.592730-592730

2020

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The Occurrence, Detection, and Avoidance of Mitochondrial DNA Translocations in Mammalian Systematics and Phylogeography

Journal of mammalogy, 2007-08, Vol.88 (4), p.908-920

2007

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Accelerated molecular evolution in Microtus (Rodentia) as assessed via complete mitochondrial genome sequences

Genetica, 2006-09, Vol.128 (1-3), p.95-108

2006

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Cytonuclear interactions and relaxed selection accelerate sequence evolution in organelle ribosomes

Molecular biology and evolution, 2014-03, Vol.31 (3), p.673-682

2014

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Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses

Nucleic acids research, 2022-01, Vol.50 (D1), p.D1032

2022

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Positive Selection in Rapidly Evolving Plastid-Nuclear Enzyme Complexes

Genetics (Austin), 2016-12, Vol.204 (4), p.1507-1522

2016

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Rapid Shifts in Mitochondrial tRNA Import in a Plant Lineage with Extensive Mitochondrial tRNA Gene Loss

Molecular biology and evolution, 2021-12, Vol.38 (12), p.5735-5751

2021

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A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae)

Molecular phylogenetics and evolution, 2014-03, Vol.72, p.82-89

2014

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Bovine Genome Database: new annotation tools for a new reference genome

Nucleic acids research, 2020-01, Vol.48 (D1), p.D676

2020

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Lepidoptera genomes: current knowledge, gaps and future directions

Current opinion in insect science, 2018-02, Vol.25, p.99-105

2018

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AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes

Mammalian genome, 2023-09, Vol.34 (3), p.418-436

2023

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Simultaneous Extraction of High-Quality RNA and DNA from Small Tissue Samples

The Journal of heredity, 2009-03, Vol.100 (2), p.246-250

2009

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Extensive mitochondrial DNA transfer in a rapidly evolving rodent has been mediated by independent insertion events and by duplications

Gene, 2007-10, Vol.401 (1), p.61-70

2007

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Molecular analyses of mitochondrial pseudogenes within the nuclear genome of arvicoline rodents

Genetica, 2008-01, Vol.132 (1), p.21-33

2008

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Demography and Phylogenetic Utility of Numt Pseudogenes in the Southern Red-Backed Vole (Myodes gapperi)

Journal of mammalogy, 2009-06, Vol.90 (3), p.561-570

2009

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De-novo long-read genome assembly and annotation of the luna moth ( Actias luna ) fully resolves repeat-rich silk genes

Genome biology and evolution, 2024-07, Vol.16 (7)

2024

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Abundance, genetic diversity and conservation of Louisiana black bears (Ursus americanus luteolus) as detected through noninvasive sampling

Conservation genetics, 2004-01, Vol.5 (5), p.647-659

2004

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Abundance, genetic diversity and conservation of Louisiana black bears (Ursus americanus luteolus) as detected through noninvasive sampling

Conservation genetics, 2004-10, Vol.5 (5), p.647-659

2004

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Molecular approaches in behavioural research: a cautionary note regarding mitochondrial transfers to the nucleus (numts)

Animal behaviour, 2011-09, Vol.82 (3), p.601-606

2011

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Integrating numt pseudogenes into mitochondrial phylogenies: comment on 'Mitochondrial phylogeny of Arvicolinae using comprehensive taxonomic sampling yields new insights'

Biological journal of the Linnean Society, 2009-05, Vol.97 (1), p.223-224

2009

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Integrating numt pseudogenes into mitochondrial phylogenies: comment on ‘Mitochondrial phylogeny of Arvicolinae using comprehensive taxonomic sampling yields new insights’: NUMT PSEUDOGENES

Biological journal of the Linnean Society, 2009-05, Vol.97 (1), p.223-224

2009

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Molecular evolution of mitochondrial translocations within the Arvicolinae

Triant, Deborah A

2006

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Comparison of detection methods and genome quality when quantifying nuclear mitochondrial insertions in vertebrate genomes

Most partial domains in proteins are alignment and annotation artifacts

Editorial: Gene Regulation as a Driver of Adaptation and Speciation

MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database

The Occurrence, Detection, and Avoidance of Mitochondrial DNA Translocations in Mammalian Systematics and Phylogeography

Accelerated molecular evolution in Microtus (Rodentia) as assessed via complete mitochondrial genome sequences

Cytonuclear interactions and relaxed selection accelerate sequence evolution in organelle ribosomes

Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses

Positive Selection in Rapidly Evolving Plastid-Nuclear Enzyme Complexes

Rapid Shifts in Mitochondrial tRNA Import in a Plant Lineage with Extensive Mitochondrial tRNA Gene Loss

A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae)

Bovine Genome Database: new annotation tools for a new reference genome

Lepidoptera genomes: current knowledge, gaps and future directions

AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes

Simultaneous Extraction of High-Quality RNA and DNA from Small Tissue Samples

Extensive mitochondrial DNA transfer in a rapidly evolving rodent has been mediated by independent insertion events and by duplications

Molecular analyses of mitochondrial pseudogenes within the nuclear genome of arvicoline rodents

Demography and Phylogenetic Utility of Numt Pseudogenes in the Southern Red-Backed Vole (Myodes gapperi)

De-novo long-read genome assembly and annotation of the luna moth ( Actias luna ) fully resolves repeat-rich silk genes

Abundance, genetic diversity and conservation of Louisiana black bears (Ursus americanus luteolus) as detected through noninvasive sampling

Abundance, genetic diversity and conservation of Louisiana black bears (Ursus americanus luteolus) as detected through noninvasive sampling

Molecular approaches in behavioural research: a cautionary note regarding mitochondrial transfers to the nucleus (numts)

Integrating numt pseudogenes into mitochondrial phylogenies: comment on 'Mitochondrial phylogeny of Arvicolinae using comprehensive taxonomic sampling yields new insights'

Integrating numt pseudogenes into mitochondrial phylogenies: comment on ‘Mitochondrial phylogeny of Arvicolinae using comprehensive taxonomic sampling yields new insights’: NUMT PSEUDOGENES

Molecular evolution of mitochondrial translocations within the Arvicolinae

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