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1338Improving Detection and Investigation of Listeriosis Outbreaks Using Real-Time Whole-Genome Sequencing

Open forum infectious diseases, 2014-12, Vol.1 (suppl_1), p.S57-S57

2014

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Antimicrobial resistance in multistate outbreaks of nontyphoidal Salmonella infections linked to animal contact-United States, 2015-2018

Journal of clinical microbiology, 2024-01, Vol.62 (1), p.e0098123

2024

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Assessment of Genetic Stability During Serial In Vitro Passage and In Vivo Carriage

Foodborne pathogens and disease, 2021-12, Vol.18 (12), p.894-901

2021

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Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

PeerJ (San Francisco, CA), 2017-10, Vol.5, p.e3893, Article e3893

2017

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Canonical Single Nucleotide Polymorphisms O157:H7

PloS one, 2015-07, Vol.10 (7)

2015

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Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7

PloS one, 2015-07, Vol.10 (7), p.e0131967-e0131967

2015

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Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7: e0131967

PloS one, 2015-07, Vol.10 (7)

2015

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Characterisation of ropy slime-producing Lactobacillus sakei using repetitive element sequence-based PCR

International journal of food microbiology, 1999-09, Vol.50 (3), p.215-219

1999

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Characterization of Salmonella enterica serovar Enteritidis isolates recovered from blood and stool specimens in Thailand

BMC microbiology, 2012-06, Vol.12 (1), p.92-92

2012

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Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis

Journal of clinical microbiology, 2015-01, Vol.53 (1), p.212-218

2015

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Comparison of four enzymatic library preparation kits for sequencing Shiga toxin-producing Escherichia coli for surveillance and outbreak detection

Journal of microbiological methods, 2021-11, Vol.190, p.106329-106329, Article 106329

2021

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Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25

Genome announcements (Washington, DC), 2015-12, Vol.3 (6)

2015

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Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains

Genome announcements (Washington, DC), 2014-07, Vol.2 (4)

2014

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Emergence and clonal dissemination of Salmonella enterica serovar Enteritidis causing salmonellosis in Mauritius

Journal of infection in developing countries, 2014-04, Vol.8 (4), p.454-460

2014

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Epidemiology of a Salmonella enterica subsp. enterica Serovar Typhimurium Strain Associated with a Songbird Outbreak

Applied and Environmental Microbiology, 2012-10, Vol.78 (20), p.7290-7298

2012

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Epidemiology of a Salmonella enterica subsp. enterica SerovarTyphimurium Strain Associated with a Songbird Outbreak

Applied and environmental microbiology, 2012, Vol.78 (20), p.7290-7298

2012

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Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks

PeerJ (San Francisco, CA), 2021-11, Vol.9, p.e12446-e12446, Article e12446

2021

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Evaluation of the Illumina iSeq whole genome sequencing system for enteric disease surveillance and outbreak detection

Journal of microbiological methods, 2023-08, Vol.211 (C), p.106784-106784, Article 106784

2023

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Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises

Scientific data, 2020-11, Vol.7 (1), p.402, Article 402

2020

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Genetic Diversity in Salmonella enterica in Outbreaks of Foodborne and Zoonotic Origin in the USA in 2006-2017

Microorganisms (Basel), 2024-07, Vol.12 (8), p.1563

2024

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Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes

Genome announcements (Washington, DC), 2014-08, Vol.2 (4)

2014

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Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016

PloS one, 2018-12, Vol.13 (12), p.e0208735-e0208735

2018

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Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages

Emerging infectious diseases, 2014-09, Vol.20 (9), p.1481-1489

2014

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High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps

Genome announcements (Washington, DC), 2016-06, Vol.4 (3)

2016

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High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps

Genome announcements (Washington, DC), 2017-08, Vol.5 (35)

2017

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1338Improving Detection and Investigation of Listeriosis Outbreaks Using Real-Time Whole-Genome Sequencing

Antimicrobial resistance in multistate outbreaks of nontyphoidal Salmonella infections linked to animal contact-United States, 2015-2018

Assessment of Genetic Stability During Serial In Vitro Passage and In Vivo Carriage

Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

Canonical Single Nucleotide Polymorphisms O157:H7

Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7

Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7: e0131967

Characterisation of ropy slime-producing Lactobacillus sakei using repetitive element sequence-based PCR

Characterization of Salmonella enterica serovar Enteritidis isolates recovered from blood and stool specimens in Thailand

Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis

Comparison of four enzymatic library preparation kits for sequencing Shiga toxin-producing Escherichia coli for surveillance and outbreak detection

Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25

Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains

Emergence and clonal dissemination of Salmonella enterica serovar Enteritidis causing salmonellosis in Mauritius

Epidemiology of a Salmonella enterica subsp. enterica Serovar Typhimurium Strain Associated with a Songbird Outbreak

Epidemiology of a Salmonella enterica subsp. enterica SerovarTyphimurium Strain Associated with a Songbird Outbreak

Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks

Evaluation of the Illumina iSeq whole genome sequencing system for enteric disease surveillance and outbreak detection

Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises

Genetic Diversity in Salmonella enterica in Outbreaks of Foodborne and Zoonotic Origin in the USA in 2006-2017

Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes

Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016

Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages

High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps

High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps

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