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Linking the resistome and plasmidome to the microbiome

The ISME Journal, 2019-10, Vol.13 (10), p.2437-2446

2019

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The Transferable Resistome of Produce

mBio, 2018-11, Vol.9 (6)

2018

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Plasmids, a molecular cornerstone of antimicrobial resistance in the One Health era

Nature reviews. Microbiology, 2024-01, Vol.22 (1), p.18-32

2024

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Estimating the transfer rates of bacterial plasmids with an adapted Luria–Delbrück fluctuation analysis

PLoS biology, 2022-07, Vol.20 (7), p.e3001732-e3001732

2022

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Host- plasmid network structure in wastewater is linked to antimicrobial resistance genes

Nature communications, 2024-01, Vol.15 (1), p.555-555, Article 555

2024

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Targeted metagenomics demonstrates the ecological role of IS1071 in bacterial community adaptation to pesticide degradation

Environmental microbiology, 2018-11, Vol.20 (11), p.4091-4111

2018

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Emerging patterns of plasmid-host coevolution that stabilize antibiotic resistance

Scientific reports, 2017-07, Vol.7 (1), p.4853-10, Article 4853

2017

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Plasmid Detection, Characterization, and Ecology

Microbiology spectrum, 2015-02, Vol.3 (1), p.PLAS-0038-2014

2015

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Evolving Populations in Biofilms Contain More Persistent Plasmids

Molecular biology and evolution, 2020-06, Vol.37 (6), p.1563-1576

2020

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Predicting Plasmid Promiscuity Based on Genomic Signature

Journal of Bacteriology, 2010-11, Vol.192 (22), p.6045-6055

2010

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Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool

FEMS microbiology reviews, 2007-07, Vol.31 (4), p.449-477

2007

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Responses of Soil Bacterial Communities to Nitrogen Deposition and Precipitation Increment Are Closely Linked with Aboveground Community Variation

Microbial ecology, 2016-05, Vol.71 (4), p.974-989

2016

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Evolved plasmid‐host interactions reduce plasmid interference cost

Molecular microbiology, 2016-09, Vol.101 (5), p.743-756

2016

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Inferring the evolutionary history of IncP-1 plasmids despite incongruence among backbone gene trees

Molecular biology and evolution, 2013-01, Vol.30 (1), p.154-166

2013

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Selection Pressure Required for Long-Term Persistence of blaCMY-2-Positive IncA/C Plasmids

Applied and Environmental Microbiology, 2011-07, Vol.77 (13), p.4486-4493

2011

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Editorial: Plasmid transfer-mechanisms, ecology, evolution and applications

Frontiers in microbiology, 2022-08, Vol.13, p.993628-993628

2022

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Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance

Molecular biology and evolution, 2016-04, Vol.33 (4), p.885-897

2016

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Increased Transfer of a Multidrug Resistance Plasmid in Escherichia coli Biofilms at the Air-Liquid Interface

Applied and Environmental Microbiology, 2011-08, Vol.77 (15), p.5079-5088

2011

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Contagious Antibiotic Resistance: Plasmid Transfer among Bacterial Residents of the Zebrafish Gut

Applied and environmental microbiology, 2021-04, Vol.87 (9), p.1

2021

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Long-Range PCR Reveals the Genetic Cargo of IncP-1 Plasmids in the Complex Microbial Community of an On-Farm Biopurification System Treating Pesticide-Contaminated Wastewater

Applied and environmental microbiology, 2022-02, Vol.88 (3), p.e0164821-e0164821

2022

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Biosolids as a Source of Antibiotic Resistance Plasmids for Commensal and Pathogenic Bacteria

Frontiers in microbiology, 2021-04, Vol.12, p.606409-606409

2021

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Diverse Broad-Host-Range Plasmids from Freshwater Carry Few Accessory Genes

Applied and Environmental Microbiology, 2013-12, Vol.79 (24), p.7684-7695

2013

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Broad-Host-Range Plasmids from Agricultural Soils Have IncP-1 Backbones with Diverse Accessory Genes

Applied and Environmental Microbiology, 2011-11, Vol.77 (22), p.7975-7983

2011

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Flow cytometry and real-time quantitative PCR as tools for assessing plasmid persistence

Applied and Environmental Microbiology, 2014-09, Vol.80 (17), p.5439-5446

2014

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Stability of a promiscuous plasmid in different hosts: no guarantee for a long-term relationship

Microbiology (Society for General Microbiology), 2007-02, Vol.153 (Pt 2), p.452

2007

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Linking the resistome and plasmidome to the microbiome

The Transferable Resistome of Produce

Plasmids, a molecular cornerstone of antimicrobial resistance in the One Health era

Estimating the transfer rates of bacterial plasmids with an adapted Luria–Delbrück fluctuation analysis

Host- plasmid network structure in wastewater is linked to antimicrobial resistance genes

Targeted metagenomics demonstrates the ecological role of IS1071 in bacterial community adaptation to pesticide degradation

Emerging patterns of plasmid-host coevolution that stabilize antibiotic resistance

Plasmid Detection, Characterization, and Ecology

Evolving Populations in Biofilms Contain More Persistent Plasmids

Predicting Plasmid Promiscuity Based on Genomic Signature

Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool

Responses of Soil Bacterial Communities to Nitrogen Deposition and Precipitation Increment Are Closely Linked with Aboveground Community Variation

Evolved plasmid‐host interactions reduce plasmid interference cost

Inferring the evolutionary history of IncP-1 plasmids despite incongruence among backbone gene trees

Selection Pressure Required for Long-Term Persistence of blaCMY-2-Positive IncA/C Plasmids

Editorial: Plasmid transfer-mechanisms, ecology, evolution and applications

Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance

Increased Transfer of a Multidrug Resistance Plasmid in Escherichia coli Biofilms at the Air-Liquid Interface

Contagious Antibiotic Resistance: Plasmid Transfer among Bacterial Residents of the Zebrafish Gut

Long-Range PCR Reveals the Genetic Cargo of IncP-1 Plasmids in the Complex Microbial Community of an On-Farm Biopurification System Treating Pesticide-Contaminated Wastewater

Biosolids as a Source of Antibiotic Resistance Plasmids for Commensal and Pathogenic Bacteria

Diverse Broad-Host-Range Plasmids from Freshwater Carry Few Accessory Genes

Broad-Host-Range Plasmids from Agricultural Soils Have IncP-1 Backbones with Diverse Accessory Genes

Flow cytometry and real-time quantitative PCR as tools for assessing plasmid persistence

Stability of a promiscuous plasmid in different hosts: no guarantee for a long-term relationship

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