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Cytoplasmic RNA decay pathways - Enzymes and mechanisms

Biochimica et biophysica acta, 2016-12, Vol.1863 (12), p.3125-3147

2016

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Global view on the metabolism of RNA poly(A) tails in yeast Saccharomyces cerevisiae

Nature communications, 2021-08, Vol.12 (1), p.4951-4951, Article 4951

2021

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Biochemical and structural bioinformatics studies of fungal CutA nucleotidyltransferases explain their unusual specificity toward CTP and increased tendency for cytidine incorporation at the 3'-terminal positions of synthesized tails

RNA (Cambridge), 2017-12, Vol.23 (12), p.1902-1926

2017

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Elimination of 01/A'-A0 pre-rRNA processing by-product in human cells involves cooperative action of two nuclear exosome-associated nucleases: RRP6 and DIS3

RNA (Cambridge), 2018-12, Vol.24 (12), p.1677-1692

2018

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The RNA exosome complex central channel controls both exonuclease and endonuclease Dis3 activities in vivo and in vitro

Nucleic acids research, 2013-04, Vol.41 (6), p.3845

2013

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Perlman syndrome nuclease DIS3L2 controls cytoplasmic non-coding RNAs and provides surveillance pathway for maturing snRNAs

Nucleic acids research, 2016-12, Vol.44 (21), p.10437

2016

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The strain-dependent cytostatic activity of Lactococcus lactis on CRC cell lines is mediated through the release of arginine deiminase

Microbial cell factories, 2024-03, Vol.23 (1), p.82-82, Article 82

2024

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Comparison of preribosomal RNA processing pathways in yeast, plant and human cells – focus on coordinated action of endo‐ and exoribonucleases

FEBS letters, 2017-07, Vol.591 (13), p.1801-1850

2017

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A short splicing isoform of HBS1L links the cytoplasmic exosome and SKI complexes in humans

Nucleic acids research, 2017-02, Vol.45 (4), p.2068

2017

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Modeling of mRNA deadenylation rates reveal a complex relationship between mRNA deadenylation and decay

The EMBO journal, 2024-10

2024

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Novel endoribonucleases as central players in various pathways of eukaryotic RNA metabolism

RNA (Cambridge), 2010-09, Vol.16 (9), p.1692-1724

2010

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The RNA exosome complex central channel controls both exonuclease and endonuclease Dis3 activities in vivo and in vitro

Nucleic acids research, 2013-04, Vol.41 (6), p.3845-3858

2013

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Exonuclease hDIS3L2 specifies an exosome-independent 3′-5′ degradation pathway of human cytoplasmic mRNA

The EMBO journal, 2013-07, Vol.32 (13), p.1855-1868

2013

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Structure and mechanism of CutA, RNA nucleotidyl transferase with an unusual preference for cytosine

Nucleic acids research, 2020-09, Vol.48 (16), p.9387-9405

2020

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Structure of the Active Subunit of the Yeast Exosome Core, Rrp44: Diverse Modes of Substrate Recruitment in the RNase II Nuclease Family

Molecular cell, 2008-03, Vol.29 (6), p.717-728

2008

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DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts

Genome research, 2015-11, Vol.25 (11), p.1622-1633

2015

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Differential stability of mitochondrial mRNA in HeLa cells

Acta biochimica polonica, 2006-01, Vol.53 (1), p.157-167

2006

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Versatile approach for functional analysis of human proteins and efficient stable cell line generation using FLP-mediated recombination system

PloS one, 2018-03, Vol.13 (3), p.e0194887-e0194887

2018

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The eukaryotic RNA exosome: Same scaffold but variable catalytic subunits

RNA biology, 2011-01, Vol.8 (1), p.61-66

2011

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An integrative approach uncovers transcriptome‐wide determinants of mRNA stability regulation in Saccharomyces cerevisiae

The FEBS journal, 2021-06, Vol.288 (11), p.3418-3423

2021

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Mechanisms of RNA Degradation by the Eukaryotic Exosome

Chembiochem : a European journal of chemical biology, 2010-05, Vol.11 (7), p.938-945

2010

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The RNA-Binding Landscape of HAX1 Protein Indicates Its Involvement in Translation and Ribosome Assembly

Cells (Basel, Switzerland), 2022-09, Vol.11 (19), p.2943

2022

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Specific induction and carbon/nitrogen repression of arginine catabolism gene of Aspergillus nidulans—functional in vivo analysis of the otaA promoter

Fungal genetics and biology, 2003-03, Vol.38 (2), p.175-186

2003

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Endonucleolytic RNA cleavage by a eukaryotic exosome

Nature, 2008-12, Vol.456 (7224), p.993-996

2008

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SKI complex: A multifaceted cytoplasmic RNA exosome cofactor in mRNA metabolism with links to disease, developmental processes, and antiviral responses

Wiley interdisciplinary reviews. RNA, 2023-11, Vol.14 (6), p.e1795-e1795

2023

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Cytoplasmic RNA decay pathways - Enzymes and mechanisms

Global view on the metabolism of RNA poly(A) tails in yeast Saccharomyces cerevisiae

Biochemical and structural bioinformatics studies of fungal CutA nucleotidyltransferases explain their unusual specificity toward CTP and increased tendency for cytidine incorporation at the 3'-terminal positions of synthesized tails

Elimination of 01/A'-A0 pre-rRNA processing by-product in human cells involves cooperative action of two nuclear exosome-associated nucleases: RRP6 and DIS3

The RNA exosome complex central channel controls both exonuclease and endonuclease Dis3 activities in vivo and in vitro

Perlman syndrome nuclease DIS3L2 controls cytoplasmic non-coding RNAs and provides surveillance pathway for maturing snRNAs

The strain-dependent cytostatic activity of Lactococcus lactis on CRC cell lines is mediated through the release of arginine deiminase

Comparison of preribosomal RNA processing pathways in yeast, plant and human cells – focus on coordinated action of endo‐ and exoribonucleases

A short splicing isoform of HBS1L links the cytoplasmic exosome and SKI complexes in humans

Modeling of mRNA deadenylation rates reveal a complex relationship between mRNA deadenylation and decay

Novel endoribonucleases as central players in various pathways of eukaryotic RNA metabolism

The RNA exosome complex central channel controls both exonuclease and endonuclease Dis3 activities in vivo and in vitro

Exonuclease hDIS3L2 specifies an exosome-independent 3′-5′ degradation pathway of human cytoplasmic mRNA

Structure and mechanism of CutA, RNA nucleotidyl transferase with an unusual preference for cytosine

Structure of the Active Subunit of the Yeast Exosome Core, Rrp44: Diverse Modes of Substrate Recruitment in the RNase II Nuclease Family

DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts

Differential stability of mitochondrial mRNA in HeLa cells

Versatile approach for functional analysis of human proteins and efficient stable cell line generation using FLP-mediated recombination system

The eukaryotic RNA exosome: Same scaffold but variable catalytic subunits

An integrative approach uncovers transcriptome‐wide determinants of mRNA stability regulation in Saccharomyces cerevisiae

Mechanisms of RNA Degradation by the Eukaryotic Exosome

The RNA-Binding Landscape of HAX1 Protein Indicates Its Involvement in Translation and Ribosome Assembly

Specific induction and carbon/nitrogen repression of arginine catabolism gene of Aspergillus nidulans—functional in vivo analysis of the otaA promoter

Endonucleolytic RNA cleavage by a eukaryotic exosome

SKI complex: A multifaceted cytoplasmic RNA exosome cofactor in mRNA metabolism with links to disease, developmental processes, and antiviral responses

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