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The Long Noncoding RNAs NEAT1 and MALAT1 Bind Active Chromatin Sites

Molecular cell, 2014-09, Vol.55 (5), p.791-802

2014

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Design and analysis of ChIP-seq experiments for DNA-binding proteins

Nature biotechnology, 2008-12, Vol.26 (12), p.1351-1359

2008

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Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate

Science (American Association for the Advancement of Science), 2019-03, Vol.363 (6432), p.1217-1222

2019

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Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction

Genes & development, 2017-03, Vol.31 (5), p.451-462

2017

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SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation

Nature genetics, 2017-02, Vol.49 (2), p.289-295

2017

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MNase titration reveals differences between nucleosome occupancy and chromatin accessibility

Nature communications, 2016-05, Vol.7 (1), p.11485-11485, Article 11485

2016

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The KDM5A/RBP2 histone demethylase represses NOTCH signaling to sustain neuroendocrine differentiation and promote small cell lung cancer tumorigenesis

Genes & development, 2019-12, Vol.33 (23-24), p.1718-1738

2019

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Histone Variant H2A.Bbd Is Associated with Active Transcription and mRNA Processing in Human Cells

Molecular cell, 2012-08, Vol.47 (4), p.596-607

2012

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Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters

Proceedings of the National Academy of Sciences - PNAS, 2013-06, Vol.110 (25), p.10165-10170

2013

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Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming

Nature communications, 2014-08, Vol.5 (1), p.4719, Article 4719

2014

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Nature and function of insulator protein binding sites in the Drosophila genome

Genome research, 2012-11, Vol.22 (11), p.2188-2198

2012

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Regulation of neuroendocrine plasticity by the RNA-binding protein ZFP36L1

Nature communications, 2022-08, Vol.13 (1), p.4998-4998, Article 4998

2022

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Lineage-specific canonical and non-canonical activity of EZH2 in advanced prostate cancer subtypes

Nature communications, 2024-08, Vol.15 (1), p.6779-15, Article 6779

2024

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Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin

Genome research, 2011-02, Vol.21 (2), p.147-163

2011

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Cancer-associated fibroblasts are the main contributors to epithelial-to-mesenchymal signatures in the tumor microenvironment

Scientific reports, 2023-02, Vol.13 (1), p.3051-3051, Article 3051

2023

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A Novel Roll-and-Slide Mechanism of DNA Folding in Chromatin: Implications for Nucleosome Positioning

Journal of molecular biology, 2007-08, Vol.371 (3), p.725-738

2007

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Genomic and biological study of fusion genes as resistance mechanisms to EGFR inhibitors

Nature communications, 2022-09, Vol.13 (1), p.5614-5614, Article 5614

2022

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Expansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage Compensation

PLoS genetics, 2016-07, Vol.12 (7), p.e1006120-e1006120

2016

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Enhancer regions show high histone H3.3 turnover that changes during differentiation

eLife, 2016-06, Vol.5

2016

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Differential Occupancy of Two GA-Binding Proteins Promotes Targeting of the Drosophila Dosage Compensation Complex to the Male X Chromosome

Cell reports (Cambridge), 2018-03, Vol.22 (12), p.3227-3239

2018

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Impact of chromatin structure on sequence variability in the human genome

Nature structural & molecular biology, 2011-04, Vol.18 (4), p.510-515

2011

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Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes

Genome Research, 2009-06, Vol.19 (6), p.967-977

2009

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Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain

PLoS genetics, 2012-09, Vol.8 (9), p.e1002954-e1002954

2012

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Single‐Assay Profiling of Nucleosome Occupancy and Chromatin Accessibility

Current protocols in molecular biology (Print), 2017-10, Vol.120 (1), p.21.34.1-21.34.18

2017

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The Long Noncoding RNAs NEAT1 and MALAT1 Bind Active Chromatin Sites

Design and analysis of ChIP-seq experiments for DNA-binding proteins

Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate

Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction

SMARCB1-mediated SWI/SNF complex function is essential for enhancer regulation

MNase titration reveals differences between nucleosome occupancy and chromatin accessibility

The KDM5A/RBP2 histone demethylase represses NOTCH signaling to sustain neuroendocrine differentiation and promote small cell lung cancer tumorigenesis

Histone Variant H2A.Bbd Is Associated with Active Transcription and mRNA Processing in Human Cells

Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters

Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming

Nature and function of insulator protein binding sites in the Drosophila genome

Regulation of neuroendocrine plasticity by the RNA-binding protein ZFP36L1

Lineage-specific canonical and non-canonical activity of EZH2 in advanced prostate cancer subtypes

Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin

Cancer-associated fibroblasts are the main contributors to epithelial-to-mesenchymal signatures in the tumor microenvironment

A Novel Roll-and-Slide Mechanism of DNA Folding in Chromatin: Implications for Nucleosome Positioning

Genomic and biological study of fusion genes as resistance mechanisms to EGFR inhibitors

Expansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage Compensation

Enhancer regions show high histone H3.3 turnover that changes during differentiation

Differential Occupancy of Two GA-Binding Proteins Promotes Targeting of the Drosophila Dosage Compensation Complex to the Male X Chromosome

Impact of chromatin structure on sequence variability in the human genome

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes

Enrichment of HP1a on Drosophila chromosome 4 genes creates an alternate chromatin structure critical for regulation in this heterochromatic domain

Diminished Efficacy of Programmed Death-(Ligand)1 Inhibition in STK11- and KEAP1-Mutant Lung Adenocarcinoma Is Affected by KRAS Mutation Status

Single‐Assay Profiling of Nucleosome Occupancy and Chromatin Accessibility

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