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PhyloFisher: A phylogenomic package for resolving eukaryotic relationships

PLoS biology, 2021-08, Vol.19 (8), p.e3001365-e3001365

2021

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Between a Pod and a Hard Test: The Deep Evolution of Amoebae

Molecular biology and evolution, 2017-09, Vol.34 (9), p.2258-2270

2017

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An efficient single-cell transcriptomics workflow for microbial eukaryotes benchmarked on Giardia intestinalis cells

BMC genomics, 2020-06, Vol.21 (1), p.448-448, Article 448

2020

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Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group

Biology direct, 2016-12, Vol.11 (1), p.69-69, Article 69

2016

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Sorodiplophrys stercorea: Another Novel Lineage of Sorocarpic Multicellularity

The Journal of eukaryotic microbiology, 2016-09, Vol.63 (5), p.623-628

2016

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Multicellularity: Amoebae follow the leader to food

Current biology, 2022-05, Vol.32 (9), p.R418-R420

2022

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A New Species of Flamella (Amoebozoa, Variosea, Gracilipodida) Isolated from a Freshwater Pool in Southern Mississippi, USA

Acta Protozoologica, 2016-01, Vol.55 (2), p.111-117

2016

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A genetic toolbox for marine protists

Nature methods, 2020-05, Vol.17 (5), p.469-470

2020

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Phylogenetic placement of the protosteloid amoeba Microglomus paxillus identifies another case of sporocarpic fruiting in Discosea (Amoebozoa)

The Journal of eukaryotic microbiology, 2023-07, Vol.70 (4), p.e12971-n/a

2023

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Phylogenomics and Morphological Reconstruction of Arcellinida Testate Amoebae Highlight Diversity of Microbial Eukaryotes in the Neoproterozoic

Current biology, 2019-03, Vol.29 (6), p.991-1001.e3

2019

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A New Amoeba with Protosteloid Fruiting: Luapeleamoeba hula n. g. n. sp. (Acanthamoebidae, Centramoebida, Amoebozoa)

Acta Protozoologica, 2016-01, Vol.55 (3), p.123-134

2016

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The integrin-mediated adhesive complex in the ancestor of animals, fungi, and amoebae

Current biology, 2021-07, Vol.31 (14), p.3073-3085.e3

2021

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A Non‐Flagellated Member of the Myxogastria and Expansion of the Echinosteliida

The Journal of eukaryotic microbiology, 2019-07, Vol.66 (4), p.538-544

2019

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An Enigmatic Stramenopile Sheds Light on Early Evolution in Ochrophyta Plastid Organellogenesis

Molecular biology and evolution, 2022-04, Vol.39 (4)

2022

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Living in the cracks: Two novel genera of Variosea (Amoebozoa) discovered on an urban sidewalk

The Journal of eukaryotic microbiology, 2024-05, Vol.71 (3), p.e13020

2024

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Amoebozoan testate amoebae illuminate the diversity of heterotrophs and the complexity of ecosystems throughout geological time

Proceedings of the National Academy of Sciences - PNAS, 2024-07, Vol.121 (30), p.e2319628121

2024

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Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group

Genome biology and evolution, 2018-02, Vol.10 (2), p.427-433

2018

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Coprophilic amoebae and flagellates, including Guttulinopsis, Rosculus and Helkesimastix, characterise a divergent and diverse rhizarian radiation and contribute to a large diversity of faecal-associated protists

Environmental microbiology, 2016-05, Vol.18 (5), p.1604-1619

2016

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Molecular phylogenetic analyses support the validity of Ceratiomyxa porioides (Amoebozoa, Eumycetozoa) at species level

European journal of protistology, 2024-06, Vol.94, p.126083, Article 126083

2024

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Phylogenetic reconstruction and evolution of the Rab GTPase gene family in Amoebozoa

Small GTPases, 2022, Vol.13 (1), p.100-113

2022

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Evolution of bacterial recombinase A (recA) in eukaryotes explained by addition of genomic data of key microbial lineages

Proceedings of the Royal Society. B, Biological sciences, 2016-10, Vol.283 (1840), p.20161453

2016

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First multigene analysis of Archamoebae (Amoebozoa: Conosa) robustly reveals its phylogeny and shows that Entamoebidae represents a deep lineage of the group

Molecular phylogenetics and evolution, 2016-05, Vol.98, p.41-51

2016

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Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher

Current protocols, 2024-01, Vol.4 (1), p.e969-n/a

2024

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Phylogeny and Classification of Novel Diversity in Sainouroidea (Cercozoa, Rhizaria) Sheds Light on a Highly Diverse and Divergent Clade

Protist, 2018-12, Vol.169 (6), p.853-874

2018

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Understanding the Evolution of Aggregative Multicellularity: A Molecular Phylogenetic Study of the Cellular Slime Mold Genera Sorodiplophrys and Pocheina

Tice, Alexander K

2015

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PhyloFisher: A phylogenomic package for resolving eukaryotic relationships

Between a Pod and a Hard Test: The Deep Evolution of Amoebae

An efficient single-cell transcriptomics workflow for microbial eukaryotes benchmarked on Giardia intestinalis cells

Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group

Sorodiplophrys stercorea: Another Novel Lineage of Sorocarpic Multicellularity

Multicellularity: Amoebae follow the leader to food

A New Species of Flamella (Amoebozoa, Variosea, Gracilipodida) Isolated from a Freshwater Pool in Southern Mississippi, USA

A genetic toolbox for marine protists

Phylogenetic placement of the protosteloid amoeba Microglomus paxillus identifies another case of sporocarpic fruiting in Discosea (Amoebozoa)

Phylogenomics and Morphological Reconstruction of Arcellinida Testate Amoebae Highlight Diversity of Microbial Eukaryotes in the Neoproterozoic

A New Amoeba with Protosteloid Fruiting: Luapeleamoeba hula n. g. n. sp. (Acanthamoebidae, Centramoebida, Amoebozoa)

The integrin-mediated adhesive complex in the ancestor of animals, fungi, and amoebae

A Non‐Flagellated Member of the Myxogastria and Expansion of the Echinosteliida

An Enigmatic Stramenopile Sheds Light on Early Evolution in Ochrophyta Plastid Organellogenesis

Living in the cracks: Two novel genera of Variosea (Amoebozoa) discovered on an urban sidewalk

Amoebozoan testate amoebae illuminate the diversity of heterotrophs and the complexity of ecosystems throughout geological time

Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group

Coprophilic amoebae and flagellates, including Guttulinopsis, Rosculus and Helkesimastix, characterise a divergent and diverse rhizarian radiation and contribute to a large diversity of faecal-associated protists

Molecular phylogenetic analyses support the validity of Ceratiomyxa porioides (Amoebozoa, Eumycetozoa) at species level

Phylogenetic reconstruction and evolution of the Rab GTPase gene family in Amoebozoa

Evolution of bacterial recombinase A (recA) in eukaryotes explained by addition of genomic data of key microbial lineages

First multigene analysis of Archamoebae (Amoebozoa: Conosa) robustly reveals its phylogeny and shows that Entamoebidae represents a deep lineage of the group

Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher

Phylogeny and Classification of Novel Diversity in Sainouroidea (Cercozoa, Rhizaria) Sheds Light on a Highly Diverse and Divergent Clade

Understanding the Evolution of Aggregative Multicellularity: A Molecular Phylogenetic Study of the Cellular Slime Mold Genera Sorodiplophrys and Pocheina

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