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Evolutionary biochemistry: revealing the historical and physical causes of protein properties

Nature reviews. Genetics, 2013-08, Vol.14 (8), p.559-571

2013

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Reconstructing Ancient Proteins to Understand the Causes of Structure and Function

Annual review of biophysics, 2017-05, Vol.46 (1), p.247-269

2017

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An epistatic ratchet constrains the direction of glucocorticoid receptor evolution

Nature (London), 2009-09, Vol.461 (7263), p.515-519

2009

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Analyzing protein structure and function using ancestral gene reconstruction

Current opinion in structural biology, 2010-06, Vol.20 (3), p.360-366

2010

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Mechanistic approaches to the study of evolution: the functional synthesis

Nature reviews. Genetics, 2007-09, Vol.8 (9), p.675-688

2007

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Evolution of protein specificity: insights from ancestral protein reconstruction

Current opinion in structural biology, 2017-12, Vol.47, p.113-122

2017

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Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

Nature, 2004-10, Vol.431 (7011), p.980-984

2004

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Thermodynamic system drift in protein evolution

PLoS biology, 2014-11, Vol.12 (11), p.e1001994-e1001994

2014

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Evolution of steroid receptors from an estrogen-sensitive ancestral receptor

Molecular and cellular endocrinology, 2011-03, Vol.334 (1), p.31-38

2011

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Evolution of increased complexity in a molecular machine

Nature (London), 2012-01, Vol.481 (7381), p.360-364

2012

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The simplicity of protein sequence-function relationships

Nature communications, 2024-09, Vol.15 (1), p.7953-14, Article 7953

2024

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Robustness of Ancestral Sequence Reconstruction to Phylogenetic Uncertainty

Molecular biology and evolution, 2010-09, Vol.27 (9), p.1988-1999

2010

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Evolution of Vertebrate Steroid Receptors from an Ancestral Estrogen Receptor by Ligand Exploitation and Serial Genome Expansions

Proceedings of the National Academy of Sciences - PNAS, 2001-05, Vol.98 (10), p.5671-5676

Thornton, Joseph W.

2001

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Resurrecting the Ancestral Steroid Receptor: Ancient Origin of Estrogen Signaling

Science (American Association for the Advancement of Science), 2003-09, Vol.301 (5640), p.1714-1717

2003

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Hormone-Activated Estrogen Receptors in Annelid Invertebrates: Implications for Evolution and Endocrine Disruption

Endocrinology (Philadelphia), 2009-04, Vol.150 (4), p.1731-1738

2009

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Evolution of Hormone-Receptor Complexity by Molecular Exploitation

Science (American Association for the Advancement of Science), 2006-04, Vol.312 (5770), p.97-101

2006

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Crystal Structure of an Ancient Protein: Evolution by Conformational Epistasis

Science (American Association for the Advancement of Science), 2007-09, Vol.317 (5844), p.1544-1548

2007

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Protein evolution by molecular tinkering: diversification of the nuclear receptor superfamily from a ligand-dependent ancestor

PLoS biology, 2010-10, Vol.8 (10), p.e1000497

2010

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Robustness of Reconstructed Ancestral Protein Functions to Statistical Uncertainty

Molecular biology and evolution, 2017-02, Vol.34 (2), p.247-261

2017

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Long-branch attraction bias and inconsistency in Bayesian phylogenetics

PloS one, 2009-12, Vol.4 (12), p.e7891-e7891

2009

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Intermolecular epistasis shaped the function and evolution of an ancient transcription factor and its DNA binding sites

eLife, 2015-06, Vol.4, p.e07864-e07864

2015

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Evolution of DNA Specificity in a Transcription Factor Family Produced a New Gene Regulatory Module

Cell, 2014-09, Vol.159 (1), p.58-68

2014

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Evolution of minimal specificity and promiscuity in steroid hormone receptors

PLoS genetics, 2012-11, Vol.8 (11), p.e1003072

2012

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Comment on "Ancient origins of allosteric activation in a Ser-Thr kinase"

Science (American Association for the Advancement of Science), 2020-11, Vol.370 (6519)

2020

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Vestigialization of an allosteric switch: genetic and structural mechanisms for the evolution of constitutive activity in a steroid hormone receptor

PLoS genetics, 2014-01, Vol.10 (1), p.e1004058

2014

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Evolutionary biochemistry: revealing the historical and physical causes of protein properties

Reconstructing Ancient Proteins to Understand the Causes of Structure and Function

An epistatic ratchet constrains the direction of glucocorticoid receptor evolution

Analyzing protein structure and function using ancestral gene reconstruction

Mechanistic approaches to the study of evolution: the functional synthesis

Evolution of protein specificity: insights from ancestral protein reconstruction

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

Thermodynamic system drift in protein evolution

Evolution of steroid receptors from an estrogen-sensitive ancestral receptor

Evolution of increased complexity in a molecular machine

The simplicity of protein sequence-function relationships

Robustness of Ancestral Sequence Reconstruction to Phylogenetic Uncertainty

Evolution of Vertebrate Steroid Receptors from an Ancestral Estrogen Receptor by Ligand Exploitation and Serial Genome Expansions

Resurrecting the Ancestral Steroid Receptor: Ancient Origin of Estrogen Signaling

Hormone-Activated Estrogen Receptors in Annelid Invertebrates: Implications for Evolution and Endocrine Disruption

Evolution of Hormone-Receptor Complexity by Molecular Exploitation

Crystal Structure of an Ancient Protein: Evolution by Conformational Epistasis

Protein evolution by molecular tinkering: diversification of the nuclear receptor superfamily from a ligand-dependent ancestor

Robustness of Reconstructed Ancestral Protein Functions to Statistical Uncertainty

Long-branch attraction bias and inconsistency in Bayesian phylogenetics

Intermolecular epistasis shaped the function and evolution of an ancient transcription factor and its DNA binding sites

Evolution of DNA Specificity in a Transcription Factor Family Produced a New Gene Regulatory Module

Evolution of minimal specificity and promiscuity in steroid hormone receptors

Comment on "Ancient origins of allosteric activation in a Ser-Thr kinase"

Vestigialization of an allosteric switch: genetic and structural mechanisms for the evolution of constitutive activity in a steroid hormone receptor

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