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The three ghosts of medical AI: Can the black-box present deliver?

Artificial intelligence in medicine, 2022-02, Vol.124, p.102158-102158, Article 102158

2022

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propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis

Scientific reports, 2017-11, Vol.7 (1), p.16252-16252, Article 16252

2017

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Deep in the Bowel: Highly Interpretable Neural Encoder-Decoder Networks Predict Gut Metabolites from Gut Microbiome

BMC genomics, 2020-07, Vol.21 (Suppl 4), p.256-256, Article 256

2020

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Population diversity and the portfolio effect in an exploited species

Nature (London), 2010-06, Vol.465 (7298), p.609-612

2010

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Anadromy and residency in steelhead and rainbow trout ( Oncorhynchus mykiss ): a review of the processes and patterns

Canadian journal of fisheries and aquatic sciences, 2015-03, Vol.72 (3), p.319-342

2015

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Reliance on lakes by salmon, trout and charr (Oncorhynchus, Salmo and Salvelinus): An evaluation of spawning habitats, rearing strategies and trophic polymorphisms

Fish and fisheries (Oxford, England), 2019-07, Vol.20 (4), p.775-794

2019

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Benchmarking differential expression analysis tools for RNA-Seq: normalization-based vs. log-ratio transformation-based methods

BMC bioinformatics, 2018-07, Vol.19 (1), p.274-274, Article 274

2018

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Ultrasmall targeted nanoparticles with engineered antibody fragments for imaging detection of HER2-overexpressing breast cancer

Nature communications, 2018-10, Vol.9 (1), p.4141-11, Article 4141

2018

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Evidence for Geomagnetic Imprinting as a Homing Mechanism in Pacific Salmon

Current biology, 2013-02, Vol.23 (4), p.312-316

2013

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Two decades of change in sea star abundance at a subtidal site in Puget Sound, Washington

PloS one, 2023-06, Vol.18 (6), p.e0286384-e0286384

2023

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Climate change alters the reproductive phenology and investment of a lacustrine fish, the three‐spine stickleback

Global change biology, 2017-06, Vol.23 (6), p.2308-2320

2017

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An Inherited Magnetic Map Guides Ocean Navigation in Juvenile Pacific Salmon

Current biology, 2014-02, Vol.24 (4), p.446-450

2014

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A collective navigation hypothesis for homeward migration in anadromous salmonids

Fish and fisheries (Oxford, England), 2016-06, Vol.17 (2), p.525-542

2016

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Interpretable Log Contrasts for the Classification of Health Biomarkers: a New Approach to Balance Selection

mSystems, 2020-04, Vol.5 (2)

2020

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Distinct evolutionary lineages of Schistocephalus parasites infecting co-occurring sculpin and stickleback fishes in Alaska

Parasitology, 2024-05, Vol.151 (6), p.626-633

2024

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GS-CA Compounds: First-In-Class HIV-1 Capsid Inhibitors Covering Multiple Grounds

Frontiers in microbiology, 2019-06, Vol.10, p.1227-1227

2019

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DeepTRIAGE: interpretable and individualised biomarker scores using attention mechanism for the classification of breast cancer sub-types

BMC medical genomics, 2020-02, Vol.13 (Suppl 3), p.20-20, Article 20

2020

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Artificial selection on reproductive timing in hatchery salmon drives a phenological shift and potential maladaptation to climate change

Evolutionary applications, 2019-08, Vol.12 (7), p.1344-1359

2019

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GraphDTA: predicting drug–target binding affinity with graph neural networks

Bioinformatics, 2021-05, Vol.37 (8), p.1140-1147

2021

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Biocomplexity and Fisheries Sustainability

Proceedings of the National Academy of Sciences - PNAS, 2003-05, Vol.100 (11), p.6564-6568

2003

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Visualizing balances of compositional data: A new alternative to balance dendrograms

F1000 research, 2018, Vol.7, p.1278-1278

Quinn, Thomas P

2018

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Beyond Correlation in the Detection of Climate Change Impacts: Testing a Mechanistic Hypothesis for Climatic Influence on Sockeye Salmon (Oncorhynchus nerka) Productivity

PloS one, 2016-04, Vol.11 (4), p.e0154356-e0154356

2016

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Understanding sequencing data as compositions: an outlook and review

Bioinformatics, 2018-08, Vol.34 (16), p.2870-2878

2018

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Rates of straying by hatchery-produced Pacific salmon ( Oncorhynchus spp.) and steelhead ( Oncorhynchus mykiss ) differ among species, life history types, and populations

Canadian journal of fisheries and aquatic sciences, 2013-05, Vol.70 (5), p.735-746

2013

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metapopulation perspective for salmon and other anadromous fish

Fish and fisheries (Oxford, England), 2007-12, Vol.8 (4), p.297-314

2007

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The three ghosts of medical AI: Can the black-box present deliver?

propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis

Deep in the Bowel: Highly Interpretable Neural Encoder-Decoder Networks Predict Gut Metabolites from Gut Microbiome

Population diversity and the portfolio effect in an exploited species

Anadromy and residency in steelhead and rainbow trout ( Oncorhynchus mykiss ): a review of the processes and patterns

Reliance on lakes by salmon, trout and charr (Oncorhynchus, Salmo and Salvelinus): An evaluation of spawning habitats, rearing strategies and trophic polymorphisms

Benchmarking differential expression analysis tools for RNA-Seq: normalization-based vs. log-ratio transformation-based methods

Ultrasmall targeted nanoparticles with engineered antibody fragments for imaging detection of HER2-overexpressing breast cancer

Evidence for Geomagnetic Imprinting as a Homing Mechanism in Pacific Salmon

Two decades of change in sea star abundance at a subtidal site in Puget Sound, Washington

Climate change alters the reproductive phenology and investment of a lacustrine fish, the three‐spine stickleback

An Inherited Magnetic Map Guides Ocean Navigation in Juvenile Pacific Salmon

A collective navigation hypothesis for homeward migration in anadromous salmonids

Interpretable Log Contrasts for the Classification of Health Biomarkers: a New Approach to Balance Selection

Distinct evolutionary lineages of Schistocephalus parasites infecting co-occurring sculpin and stickleback fishes in Alaska

GS-CA Compounds: First-In-Class HIV-1 Capsid Inhibitors Covering Multiple Grounds

DeepTRIAGE: interpretable and individualised biomarker scores using attention mechanism for the classification of breast cancer sub-types

Artificial selection on reproductive timing in hatchery salmon drives a phenological shift and potential maladaptation to climate change

GraphDTA: predicting drug–target binding affinity with graph neural networks

Biocomplexity and Fisheries Sustainability

Visualizing balances of compositional data: A new alternative to balance dendrograms

Beyond Correlation in the Detection of Climate Change Impacts: Testing a Mechanistic Hypothesis for Climatic Influence on Sockeye Salmon (Oncorhynchus nerka) Productivity

Understanding sequencing data as compositions: an outlook and review

Rates of straying by hatchery-produced Pacific salmon ( Oncorhynchus spp.) and steelhead ( Oncorhynchus mykiss ) differ among species, life history types, and populations

metapopulation perspective for salmon and other anadromous fish

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