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Cell fate reprogramming by control of intracellular network dynamics

PLoS computational biology, 2015-04, Vol.11 (4), p.e1004193-e1004193

2015

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Feedback Loops of the Mammalian Circadian Clock Constitute Repressilator

PLoS computational biology, 2016-12, Vol.12 (12), p.e1005266-e1005266

2016

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BootCellNet, a resampling-based procedure, promotes unsupervised identification of cell populations via robust inference of gene regulatory networks

PLoS computational biology, 2024-09, Vol.20 (9), p.e1012480

2024

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Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation

PLoS computational biology, 2023-11, Vol.19 (11), p.e1011491-e1011491

2023

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Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008690

2021

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Identifying (un)controllable dynamical behavior in complex networks

PLoS computational biology, 2018-12, Vol.14 (12), p.e1006630-e1006630

2018

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Discrete modeling for integration and analysis of large-scale signaling networks

PLoS computational biology, 2022-06, Vol.18 (6), p.e1010175-e1010175

2022

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Mutual inactivation of Notch receptors and ligands facilitates developmental patterning

PLoS computational biology, 2011-06, Vol.7 (6), p.e1002069-e1002069

2011

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ON/OFF and beyond--a boolean model of apoptosis

PLoS computational biology, 2009-12, Vol.5 (12), p.e1000595-e1000595

2009

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Computational identification and experimental characterization of preferred downstream positions in human core promoters

PLoS computational biology, 2021-08, Vol.17 (8), p.e1009256-e1009256

2021

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Quantitative single cell analysis uncovers the life/death decision in CD95 network

PLoS computational biology, 2018-09, Vol.14 (9), p.e1006368-e1006368

2018

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A Model of the Spatio-temporal Dynamics of Drosophila Eye Disc Development

PLoS computational biology, 2016-09, Vol.12 (9), p.e1005052-e1005052

2016

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Disease burden in patients with restless legs syndrome compared with an apnea and a control cohort

Sleep medicine, 2013-12, Vol.14, p.e50-e50

2013

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miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer

PLoS computational biology, 2021-02, Vol.17 (2), p.e1008608-e1008608

2021

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Costs Associated with the Use of Enzyme-Inducing Anti-Epileptic Drugs Versus Non-Enzyme-Inducing Anti-Epileptic Drugs: A Systematic Review

Value in health, 2014-11, Vol.17 (7), p.A394-A395

2014

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Complex genetic and epigenetic regulation deviates gene expression from a unifying global transcriptional program

PLoS computational biology, 2019-09, Vol.15 (9), p.e1007353-e1007353

2019

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A saturated reaction in repressor synthesis creates a daytime dead zone in circadian clocks

PLoS computational biology, 2019-02, Vol.15 (2), p.e1006787-e1006787

2019

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Implications of alternative routes to APC/C inhibition by the mitotic checkpoint complex

PLoS computational biology, 2018-09, Vol.14 (9), p.e1006449-e1006449

2018

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Association Between Non-Motor Symptoms and Health Care Utilization Among Patients with Parkinson’s Disease in the United States

Value in health, 2013-11, Vol.16 (7), p.A629-A629

2013

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Systematic search for recipes to generate induced pluripotent stem cells

PLoS computational biology, 2011-12, Vol.7 (12), p.e1002300-e1002300

2011

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Simulating the mammalian blastocyst--molecular and mechanical interactions pattern the embryo

PLoS computational biology, 2011-05, Vol.7 (5), p.e1001128-e1001128

2011

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Transcriptional dynamics reveal critical roles for non-coding RNAs in the immediate-early response

PLoS computational biology, 2015-04, Vol.11 (4), p.e1004217-e1004217

2015

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A Petri net model of granulomatous inflammation: implications for IL-10 mediated control of Leishmania donovani infection

PLoS computational biology, 2013-11, Vol.9 (11), p.e1003334-e1003334

2013

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Gene circuit analysis of the terminal gap gene huckebein

PLoS computational biology, 2009-10, Vol.5 (10), p.e1000548-e1000548

2009

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Binding of nucleoid-associated protein fis to DNA is regulated by DNA breathing dynamics

PLoS computational biology, 2013-01, Vol.9 (1), p.e1002881-e1002881

2013

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Cell fate reprogramming by control of intracellular network dynamics

Feedback Loops of the Mammalian Circadian Clock Constitute Repressilator

BootCellNet, a resampling-based procedure, promotes unsupervised identification of cell populations via robust inference of gene regulatory networks

Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation

Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies

Identifying (un)controllable dynamical behavior in complex networks

Discrete modeling for integration and analysis of large-scale signaling networks

Mutual inactivation of Notch receptors and ligands facilitates developmental patterning

ON/OFF and beyond--a boolean model of apoptosis

Computational identification and experimental characterization of preferred downstream positions in human core promoters

Quantitative single cell analysis uncovers the life/death decision in CD95 network

A Model of the Spatio-temporal Dynamics of Drosophila Eye Disc Development

Disease burden in patients with restless legs syndrome compared with an apnea and a control cohort

miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer

Costs Associated with the Use of Enzyme-Inducing Anti-Epileptic Drugs Versus Non-Enzyme-Inducing Anti-Epileptic Drugs: A Systematic Review

Complex genetic and epigenetic regulation deviates gene expression from a unifying global transcriptional program

A saturated reaction in repressor synthesis creates a daytime dead zone in circadian clocks

Implications of alternative routes to APC/C inhibition by the mitotic checkpoint complex

Association Between Non-Motor Symptoms and Health Care Utilization Among Patients with Parkinson’s Disease in the United States

Systematic search for recipes to generate induced pluripotent stem cells

Simulating the mammalian blastocyst--molecular and mechanical interactions pattern the embryo

Transcriptional dynamics reveal critical roles for non-coding RNAs in the immediate-early response

A Petri net model of granulomatous inflammation: implications for IL-10 mediated control of Leishmania donovani infection

Gene circuit analysis of the terminal gap gene huckebein

Binding of nucleoid-associated protein fis to DNA is regulated by DNA breathing dynamics

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