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Cre Recombinase and Other Tyrosine Recombinases

Chemical reviews, 2016-10, Vol.116 (20), p.12785-12820

2016

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Computational analysis of interactions in structurally available protein-glycosaminoglycan complexes

Glycobiology (Oxford), 2016-08, Vol.26 (8), p.850-861

2016

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Hyaluronan/collagen hydrogels containing sulfated hyaluronan improve wound healing by sustained release of heparin-binding EGF-like growth factor

Acta biomaterialia, 2019-03, Vol.86, p.135-147

2019

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Pairing of single mutations yields obligate Cre-type site-specific recombinases

Nucleic acids research, 2022-01, Vol.50 (2), p.1174-1186

2022

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Nearest-neighbor amino acids of specificity-determining residues influence the activity of engineered Cre-type recombinases

Scientific reports, 2020-08, Vol.10 (1), p.13985-13985, Article 13985

2020

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Glycosaminoglycans influence enzyme activity of MMP2 and MMP2/TIMP3 complex formation - Insights at cellular and molecular level

Scientific reports, 2019-03, Vol.9 (1), p.4905-4905, Article 4905

2019

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A genome-scale DNA repair RNAi screen identifies SPG48 as a novel gene associated with hereditary spastic paraplegia

PLoS biology, 2010-06, Vol.8 (6), p.e1000408-e1000408

2010

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Sulfated Hyaluronan Derivatives Modulate TGF-β1:Receptor Complex Formation: Possible Consequences for TGF-β1 Signaling

Scientific reports, 2017-04, Vol.7 (1), p.1210-11, Article 1210

2017

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Computational drill down on FGF1-heparin interactions through methodological evaluation

Glycoconjugate journal, 2017-06, Vol.34 (3), p.427-440

2017

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Dual Action of Sulfated Hyaluronan on Angiogenic Processes in Relation to Vascular Endothelial Growth Factor-A

Scientific reports, 2019-12, Vol.9 (1), p.18143-18, Article 18143

2019

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Stabilizing Role of Water Solvation on Anion−π Interactions in Proteins

ACS omega, 2021-10, Vol.6 (39), p.25350-25360

2021

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A Genome-Scale RNAi Screen for Oct4 Modulators Defines a Role of the Paf1 Complex for Embryonic Stem Cell Identity

Cell stem cell, 2009-05, Vol.4 (5), p.403-415

2009

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Author Correction: Sulfated glycosaminoglycans inhibit transglutaminase 2 by stabilizing its closed conformation

Scientific reports, 2022-09, Vol.12 (1), p.16191-16191, Article 16191

2022

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Sulfated glycosaminoglycans inhibit transglutaminase 2 by stabilizing its closed conformation

Scientific reports, 2022-08, Vol.12 (1), p.13326-13326, Article 13326

2022

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Importance of IdoA and IdoA(2S) ring conformations in computational studies of glycosaminoglycan–protein interactions

Carbohydrate research, 2013-11, Vol.381, p.133-137

2013

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Docking glycosaminoglycans to proteins: analysis of solvent inclusion

Journal of computer-aided molecular design, 2011-05, Vol.25 (5), p.477-489

2011

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Exploring Multiple Binding Modes Using Confined Replica Exchange Molecular Dynamics

Journal of chemical theory and computation, 2015-08, Vol.11 (8), p.3906-3918

2015

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The structural investigation of glycosaminoglycan binding to CXCL12 displays distinct interaction sites

Glycobiology (Oxford), 2016-11, Vol.26 (11), p.1209-1221

2016

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SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds

BMC bioinformatics, 2011-10, Vol.12 (1), p.398-398, Article 398

2011

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Sulfated hyaluronan attenuates inflammatory signaling pathways in macrophages involving induction of antioxidants

Proteomics (Weinheim), 2017-05, Vol.17 (10), p.e1700082-n/a

2017

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Structural analysis of the interleukin-8/glycosaminoglycan interactions by amide hydrogen/deuterium exchange mass spectrometry

Methods (San Diego, Calif.), 2015-11, Vol.89, p.45-53

2015

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Identification of CCR2-binding features in Cytl1 by a CCL2-like chemokine model

Proteins, structure, function, and bioinformatics, 2011-04, Vol.79 (4), p.1277-1292

2011

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Investigation of lysine side chain interactions of interleukin-8 with heparin and other glycosaminoglycans studied by a methylation-NMR approach

Glycobiology (Oxford), 2013-11, Vol.23 (11), p.1260-1269

2013

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Engineering of a target site-specific recombinase by a combined evolution- and structure-guided approach

Nucleic acids research, 2013-02, Vol.41 (4), p.2394-2403

2013

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Conformational dynamics promotes disordered regions from function-dispensable to essential in evolved site-specific DNA recombinases

Computational and structural biotechnology journal, 2022-01, Vol.20, p.989-1001

2022

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Cre Recombinase and Other Tyrosine Recombinases

Computational analysis of interactions in structurally available protein-glycosaminoglycan complexes

Hyaluronan/collagen hydrogels containing sulfated hyaluronan improve wound healing by sustained release of heparin-binding EGF-like growth factor

Pairing of single mutations yields obligate Cre-type site-specific recombinases

Nearest-neighbor amino acids of specificity-determining residues influence the activity of engineered Cre-type recombinases

Glycosaminoglycans influence enzyme activity of MMP2 and MMP2/TIMP3 complex formation - Insights at cellular and molecular level

A genome-scale DNA repair RNAi screen identifies SPG48 as a novel gene associated with hereditary spastic paraplegia

Sulfated Hyaluronan Derivatives Modulate TGF-β1:Receptor Complex Formation: Possible Consequences for TGF-β1 Signaling

Computational drill down on FGF1-heparin interactions through methodological evaluation

Dual Action of Sulfated Hyaluronan on Angiogenic Processes in Relation to Vascular Endothelial Growth Factor-A

Stabilizing Role of Water Solvation on Anion−π Interactions in Proteins

A Genome-Scale RNAi Screen for Oct4 Modulators Defines a Role of the Paf1 Complex for Embryonic Stem Cell Identity

Author Correction: Sulfated glycosaminoglycans inhibit transglutaminase 2 by stabilizing its closed conformation

Sulfated glycosaminoglycans inhibit transglutaminase 2 by stabilizing its closed conformation

Importance of IdoA and IdoA(2S) ring conformations in computational studies of glycosaminoglycan–protein interactions

Docking glycosaminoglycans to proteins: analysis of solvent inclusion

Exploring Multiple Binding Modes Using Confined Replica Exchange Molecular Dynamics

The structural investigation of glycosaminoglycan binding to CXCL12 displays distinct interaction sites

SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds

Sulfated hyaluronan attenuates inflammatory signaling pathways in macrophages involving induction of antioxidants

Structural analysis of the interleukin-8/glycosaminoglycan interactions by amide hydrogen/deuterium exchange mass spectrometry

Identification of CCR2-binding features in Cytl1 by a CCL2-like chemokine model

Investigation of lysine side chain interactions of interleukin-8 with heparin and other glycosaminoglycans studied by a methylation-NMR approach

Engineering of a target site-specific recombinase by a combined evolution- and structure-guided approach

Conformational dynamics promotes disordered regions from function-dispensable to essential in evolved site-specific DNA recombinases

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