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Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing

Nucleic acids research, 2011-07, Vol.39 (Web Server issue), p.W470-W474

2011

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Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

Nucleic acids research, 2010-07, Vol.38 (Web Server issue), p.W210-W213

2010

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A new parallel pipeline for DNA methylation analysis of long reads datasets

BMC bioinformatics, 2017-03, Vol.18 (1), p.161-161, Article 161

2017

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Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies

Nucleic acids research, 2009-07, Vol.37 (Web Server issue), p.W340-W344

2009

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VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy

BMC bioinformatics, 2017-09, Vol.18 (1), p.421-421, Article 421

2017

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Next station in microarray data analysis: GEPAS

Nucleic acids research, 2006-07, Vol.34 (Web Server issue), p.W486-W491

2006

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Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments

Nucleic acids research, 2008-07, Vol.36 (Web Server issue), p.W341-W346

2008

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Acceleration of short and long DNA read mapping without loss of accuracy using suffix array

Bioinformatics, 2014-12, Vol.30 (23), p.3396-3398

2014

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A parallel and sensitive software tool for methylation analysis on multicore platforms

Bioinformatics, 2015-10, Vol.31 (19), p.3130-3138

2015

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GEPAS, a web-based tool for microarray data analysis and interpretation

Nucleic acids research, 2008-07, Vol.36 (Web Server issue), p.W308-W314

2008

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Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics

Nucleic acids research, 2007-07, Vol.35 (Web Server issue), p.W38-W42

2007

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ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling

Nucleic acids research, 2007-07, Vol.35 (Web Server issue), p.W81-W85

2007

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Babelomics 5.0: functional interpretation for new generations of genomic data

Nucleic acids research, 2015-07, Vol.43 (W1), p.W117-W121

2015

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HPG pore: an efficient and scalable framework for nanopore sequencing data

BMC bioinformatics, 2016-02, Vol.17 (84), p.107, Article 107

2016

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HGVA: the Human Genome Variation Archive

Nucleic acids research, 2017-07, Vol.45 (W1), p.W189-W194

2017

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CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources

Nucleic acids research, 2012-07, Vol.40 (Web Server issue), p.W609-W614

2012

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FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments

Nucleic acids research, 2007-07, Vol.35 (Web Server issue), p.W91-W96

2007

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A framework for genomic sequencing on clusters of multicore and manycore processors

The international journal of high performance computing applications, 2018-05, Vol.32 (3), p.393-406

2018

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Fast inexact mapping using advanced tree exploration on backward search methods

BMC bioinformatics, 2015-01, Vol.16 (1), p.18-18, Article 18

2015

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Prophet, a web-based tool for class prediction using microarray data

Bioinformatics, 2007-02, Vol.23 (3), p.390-391

2007

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Concurrent and Accurate Short Read Mapping on Multicore Processors

IEEE/ACM transactions on computational biology and bioinformatics, 2015-09, Vol.12 (5), p.995-1007

2015

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Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform

IEEE/ACM transactions on computational biology and bioinformatics, 2012-07, Vol.9 (4), p.1245-1256

2012

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Scalable RNA Sequencing on Clusters of Multicore Processors

2015 IEEE Trustcom/BigDataSE/ISPA, 2015, Vol.3, p.190-195

2015

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Functional profiling and gene expression analysis of chromosomal copy number alterations

Bioinformation, 2007-04, Vol.1 (10), p.432-435

2007

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A dynamic pipeline for RNA sequencing on multicore processors

Proceedings of the 20th European MPI Users' Group Meeting, 2013, p.235-240

2013

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Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

A new parallel pipeline for DNA methylation analysis of long reads datasets

Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies

VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy

Next station in microarray data analysis: GEPAS

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments

Acceleration of short and long DNA read mapping without loss of accuracy using suffix array

A parallel and sensitive software tool for methylation analysis on multicore platforms

GEPAS, a web-based tool for microarray data analysis and interpretation

Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling

Babelomics 5.0: functional interpretation for new generations of genomic data

HPG pore: an efficient and scalable framework for nanopore sequencing data

HGVA: the Human Genome Variation Archive

CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources

FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments

A framework for genomic sequencing on clusters of multicore and manycore processors

Fast inexact mapping using advanced tree exploration on backward search methods

Prophet, a web-based tool for class prediction using microarray data

Concurrent and Accurate Short Read Mapping on Multicore Processors

Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform

Scalable RNA Sequencing on Clusters of Multicore Processors

Functional profiling and gene expression analysis of chromosomal copy number alterations

A dynamic pipeline for RNA sequencing on multicore processors

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