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Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

Bioinformatics (Oxford, England), 2014-09, Vol.30 (18), p.2598-2602

2014

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Differential expression in RNA-seq: a matter of depth

Genome research, 2011-12, Vol.21 (12), p.2213-2223

2011

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acorde unravels functionally interpretable networks of isoform co-usage from single cell data

Nature communications, 2022-04, Vol.13 (1), p.1828-18, Article 1828

2022

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Harmonization of quality metrics and power calculation in multi-omic studies

Nature communications, 2020-06, Vol.11 (1), p.3092-3092, Article 3092

2020

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Qualimap: evaluating next-generation sequencing alignment data

Bioinformatics (Oxford, England), 2012-10, Vol.28 (20), p.2678-2679

2012

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Multi-omic analysis unveils biological pathways in peripheral immune system associated to minimal hepatic encephalopathy appearance in cirrhotic patients

Scientific reports, 2021-01, Vol.11 (1), p.1907-1907, Article 1907

2021

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tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

Genome Biology, 2020-05, Vol.21 (1), p.119-32, Article 119

2020

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A multi-omic study for uncovering molecular mechanisms associated with hyperammonemia-induced cerebellar function impairment in rats

Cell biology and toxicology, 2021-02, Vol.37 (1), p.129-149

2021

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MultiBaC: A strategy to remove batch effects between different omic data types

Statistical methods in medical research, 2020-10, Vol.29 (10), p.2851-2864

2020

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Machine learning approaches in microbiome research: challenges and best practices

Frontiers in microbiology, 2023-09, Vol.14, p.1261889-1261889

2023

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Association Between Sex Hormone Levels and Clinical Outcomes in Patients With COVID-19 Admitted to Hospital: An Observational, Retrospective, Cohort Study

Frontiers in immunology, 2022-01, Vol.13, p.834851-834851

2022

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RGmatch: matching genomic regions to proximal genes in omics data integration

BMC bioinformatics, 2016-11, Vol.17 (Suppl 15), p.427-427, Article 427

2016

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Identification and visualization of differential isoform expression in RNA-seq time series

Bioinformatics, 2018-02, Vol.34 (3), p.524-526

2018

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Machine-learning-derived predictive score for early estimation of COVID-19 mortality risk in hospitalized patients

PloS one, 2022-09, Vol.17 (9), p.e0274171

2022

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STATegra: Multi-Omics Data Integration - A Conceptual Scheme With a Bioinformatics Pipeline

Frontiers in genetics, 2021-03, Vol.12, p.620453

2021

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Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action

Frontiers in microbiology, 2023-09, Vol.14, p.1257002-1257002

2023

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Mutant PRPF8 Causes Widespread Splicing Changes in Spliceosome Components in Retinitis Pigmentosa Patient iPSC-Derived RPE Cells

Frontiers in neuroscience, 2021-04, Vol.15, p.636969

2021

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Hypoxia Promotes Efficient Differentiation of Human Embryonic Stem Cells to Functional Endothelium

Stem cells (Dayton, Ohio), 2010-03, Vol.28 (3), p.407-418

2010

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Gene-environment interaction analysis of redox-related metals and genetic variants with plasma metabolic patterns in a general population from Spain: The Hortega Study

Redox biology, 2022-06, Vol.52, p.102314-102314, Article 102314

2022

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Extracellular vesicles from dental pulp mesenchymal stem cells modulate macrophage phenotype during acute and chronic cardiac inflammation in athymic nude rats with myocardial infarction

Inflammation and Regeneration, 2024-05, Vol.44 (1), p.25-25, Article 25

2024

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Elucidating the Role of Chromatin State and Transcription Factors on the Regulation of the Yeast Metabolic Cycle: A Multi-Omic Integrative Approach

Frontiers in genetics, 2018-11, Vol.9, p.578-578

2018

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A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6

Scientific data, 2020-02, Vol.7 (1), p.69-69, Article 69

2020

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Undisclosed, unmet and neglected challenges in multi-omics studies

Nature Computational Science, 2021-06, Vol.1 (6), p.395-402

2021

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Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package

Nucleic acids research, 2015-12, Vol.43 (21), p.e140

2015

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Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

Differential expression in RNA-seq: a matter of depth

acorde unravels functionally interpretable networks of isoform co-usage from single cell data

Harmonization of quality metrics and power calculation in multi-omic studies

Qualimap: evaluating next-generation sequencing alignment data

Multi-omic analysis unveils biological pathways in peripheral immune system associated to minimal hepatic encephalopathy appearance in cirrhotic patients

tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

A multi-omic study for uncovering molecular mechanisms associated with hyperammonemia-induced cerebellar function impairment in rats

MultiBaC: A strategy to remove batch effects between different omic data types

Machine learning approaches in microbiome research: challenges and best practices

Association Between Sex Hormone Levels and Clinical Outcomes in Patients With COVID-19 Admitted to Hospital: An Observational, Retrospective, Cohort Study

RGmatch: matching genomic regions to proximal genes in omics data integration

Identification and visualization of differential isoform expression in RNA-seq time series

Machine-learning-derived predictive score for early estimation of COVID-19 mortality risk in hospitalized patients

STATegra: Multi-Omics Data Integration - A Conceptual Scheme With a Bioinformatics Pipeline

Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action

Mutant PRPF8 Causes Widespread Splicing Changes in Spliceosome Components in Retinitis Pigmentosa Patient iPSC-Derived RPE Cells

Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation

Hypoxia Promotes Efficient Differentiation of Human Embryonic Stem Cells to Functional Endothelium

Gene-environment interaction analysis of redox-related metals and genetic variants with plasma metabolic patterns in a general population from Spain: The Hortega Study

Extracellular vesicles from dental pulp mesenchymal stem cells modulate macrophage phenotype during acute and chronic cardiac inflammation in athymic nude rats with myocardial infarction

Elucidating the Role of Chromatin State and Transcription Factors on the Regulation of the Yeast Metabolic Cycle: A Multi-Omic Integrative Approach

A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6

Undisclosed, unmet and neglected challenges in multi-omics studies

Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package

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