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Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

Bioinformatics, 2010-04, Vol.26 (7), p.966-968

2010

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The Evolutionary Imprint of Domestication on Genome Variation and Function of the Filamentous Fungus Aspergillus oryzae

Current biology, 2012-08, Vol.22 (15), p.1403-1409

2012

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MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets

PLoS computational biology, 2023-06, Vol.19 (6), p.e1011163-e1011163

2023

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Employing ProteoWizard to Convert Raw Mass Spectrometry Data

Current Protocols in Bioinformatics, 2014-06, Vol.46 (1), p.13.24.1-13.24.9

2014

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MyriMatch: Highly Accurate Tandem Mass Spectral Peptide Identification by Multivariate Hypergeometric Analysis

Journal of proteome research, 2007-02, Vol.6 (2), p.654-661

2007

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A Face in the Crowd: Recognizing Peptides Through Database Search

Molecular & cellular proteomics, 2011-11, Vol.10 (11), p.R111.009522-R111.009522, Article R111.009522

2011

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Proteomic Parsimony through Bipartite Graph Analysis Improves Accuracy and Transparency

Journal of proteome research, 2007-09, Vol.6 (9), p.3549-3557

2007

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Proteomics Standards Initiative: Fifteen Years of Progress and Future Work

Journal of proteome research, 2017-12, Vol.16 (12), p.4288-4298

2017

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Protein Identification Using Customized Protein Sequence Databases Derived from RNA-Seq Data

Journal of proteome research, 2012-02, Vol.11 (2), p.1009-1017

2012

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SWATH-MS based proteomic profiling of pancreatic ductal adenocarcinoma tumours reveals the interplay between the extracellular matrix and related intracellular pathways

PloS one, 2020-10, Vol.15 (10), p.e0240453-e0240453

2020

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enterocyte microvillus is a vesicle-generating organelle

The Journal of cell biology, 2009-06, Vol.185 (7), p.1285-1298

2009

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DTASelect and Contrast: Tools for Assembling and Comparing Protein Identifications from Shotgun Proteomics

Journal of proteome research, 2002-01, Vol.1 (1), p.21-26

2002

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Comparative Proteomics Analysis between Maize and Sorghum Uncovers Important Proteins and Metabolic Pathways Mediating Drought Tolerance

Life (Basel, Switzerland), 2023-01, Vol.13 (1), p.170

2023

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Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work

Journal of proteome research, 2023-02, Vol.22 (2), p.287-301

2023

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Proteomic Analysis of Chinese Hamster Ovary Cells

Journal of proteome research, 2012-11, Vol.11 (11), p.5265-5276

2012

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The Human Proteome Organization–Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry

Analytical chemistry (Washington), 2017-04, Vol.89 (8), p.4474-4479

2017

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Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification

Analytical chemistry (Washington), 2016-06, Vol.88 (11), p.5733-5741

2016

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Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer

Journal of proteome research, 2015-09, Vol.14 (9), p.3555-3567

2015

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The SEQUEST Family Tree

Journal of the American Society for Mass Spectrometry, 2015-11, Vol.26 (11), p.1814-1819

Tabb, David L.

2015

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A Label-Free Proteomic and Complementary Metabolomic Analysis of Leaves of the Resurrection Plant Xerophyta schlechteri during Dehydration

Life (Basel, Switzerland), 2021-11, Vol.11 (11), p.1242

2021

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proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data

Molecular & cellular proteomics, 2016-03, Vol.15 (3), p.1164-1175

2016

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Quality assessment for clinical proteomics

Clinical biochemistry, 2013-04, Vol.46 (6), p.411-420

Tabb, David L.

2013

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Site-Specific N‑Glycosylation Characterization of Windmill Palm Tree Peroxidase Using Novel Tools for Analysis of Plant Glycopeptide Mass Spectrometry Data

Journal of proteome research, 2016-06, Vol.15 (6), p.2026-2038

2016

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Microbial function and genital inflammation in young South African women at high risk of HIV infection

Microbiome, 2020-11, Vol.8 (1), p.165-165, Article 165

2020

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Statistical Characterization of Ion Trap Tandem Mass Spectra from Doubly Charged Tryptic Peptides

Analytical chemistry (Washington), 2003-03, Vol.75 (5), p.1155-1163

2003

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Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

The Evolutionary Imprint of Domestication on Genome Variation and Function of the Filamentous Fungus Aspergillus oryzae

MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets

Employing ProteoWizard to Convert Raw Mass Spectrometry Data

MyriMatch: Highly Accurate Tandem Mass Spectral Peptide Identification by Multivariate Hypergeometric Analysis

A Face in the Crowd: Recognizing Peptides Through Database Search

Proteomic Parsimony through Bipartite Graph Analysis Improves Accuracy and Transparency

Proteomics Standards Initiative: Fifteen Years of Progress and Future Work

Protein Identification Using Customized Protein Sequence Databases Derived from RNA-Seq Data

SWATH-MS based proteomic profiling of pancreatic ductal adenocarcinoma tumours reveals the interplay between the extracellular matrix and related intracellular pathways

enterocyte microvillus is a vesicle-generating organelle

DTASelect and Contrast: Tools for Assembling and Comparing Protein Identifications from Shotgun Proteomics

Comparative Proteomics Analysis between Maize and Sorghum Uncovers Important Proteins and Metabolic Pathways Mediating Drought Tolerance

Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work

Proteomic Analysis of Chinese Hamster Ovary Cells

The Human Proteome Organization–Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry

Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification

Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer

The SEQUEST Family Tree

A Label-Free Proteomic and Complementary Metabolomic Analysis of Leaves of the Resurrection Plant Xerophyta schlechteri during Dehydration

proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data

Quality assessment for clinical proteomics

Site-Specific N‑Glycosylation Characterization of Windmill Palm Tree Peroxidase Using Novel Tools for Analysis of Plant Glycopeptide Mass Spectrometry Data

Microbial function and genital inflammation in young South African women at high risk of HIV infection

Statistical Characterization of Ion Trap Tandem Mass Spectra from Doubly Charged Tryptic Peptides

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