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Parallelization of MAFFT for large-scale multiple sequence alignments

Bioinformatics, 2018-07, Vol.34 (14), p.2490-2492

2018

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Application of the MAFFT sequence alignment program to large data-reexamination of the usefulness of chained guide trees

Bioinformatics (Oxford, England), 2016-11, Vol.32 (21), p.3246-3251

2016

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DeepECA: an end-to-end learning framework for protein contact prediction from a multiple sequence alignment

BMC bioinformatics, 2020-01, Vol.21 (1), p.10-10, Article 10

2020

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Application of Homology Modeling by Enhanced Profile-Profile Alignment and Flexible-Fitting Simulation to Cryo-EM Based Structure Determination

International journal of molecular sciences, 2022-02, Vol.23 (4), p.1977

2022

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Origin and Evolutionary Alteration of the Mitochondrial Import System in Eukaryotic Lineages

Molecular biology and evolution, 2017-07, Vol.34 (7), p.1574-1586

2017

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Neuronal and non-neuronal functions of the synaptic cell adhesion molecule neurexin in Nematostella vectensis

Nature communications, 2024-08, Vol.15 (1), p.6495-14, Article 6495

2024

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Neural networks for protein structure and function prediction and dynamic analysis

Biophysical reviews, 2020-04, Vol.12 (2), p.569-573

2020

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Revisiting amino acid substitution matrices for identifying distantly related proteins

Bioinformatics, 2014-02, Vol.30 (3), p.317-325

2014

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Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance

BMC bioinformatics, 2017-06, Vol.18 (1), p.288-288, Article 288

2017

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Molecular architecture of the active mitochondrial protein gate

Science (American Association for the Advancement of Science), 2015-09, Vol.349 (6255), p.1544-1548

2015

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Protein–protein interaction prediction methods: from docking-based to AI-based approaches

Biophysical reviews, 2022-12, Vol.14 (6), p.1341-1348

2022

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Tyrosine phosphorylation of the GARU E3 ubiquitin ligase promotes gibberellin signalling by preventing GID1 degradation

Nature communications, 2017-10, Vol.8 (1), p.1004-15, Article 1004

2017

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Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium

Journal of biochemistry (Tokyo), 2022-04, Vol.171 (4), p.429-441

2022

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Template‐based quaternary structure prediction of proteins using enhanced profile–profile alignments

Proteins, structure, function, and bioinformatics, 2018-03, Vol.86 (S1), p.274-282

2018

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Tam41 Is a CDP-Diacylglycerol Synthase Required for Cardiolipin Biosynthesis in Mitochondria

Cell metabolism, 2013-05, Vol.17 (5), p.709-718

2013

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Protein ligand-binding site comparison by a reduced vector representation derived from multidimensional scaling of generalized description of binding sites

Methods (San Diego, Calif.), 2016-01, Vol.93, p.35-40

2016

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Class of cyclic ribosomal peptide synthetic genes in filamentous fungi

Fungal genetics and biology, 2016-01, Vol.86, p.58-70

2016

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Compound-protein interaction prediction with end-to-end learning of neural networks for graphs and sequences

Bioinformatics, 2019-01, Vol.35 (2), p.309-318

2019

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Identification of new abscisic acid receptor agonists using a wheat cell-free based drug screening system

Scientific reports, 2018-03, Vol.8 (1), p.4268-14, Article 4268

2018

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A Novel Antiviral Target Structure Involved in the RNA Binding, Dimerization, and Nuclear Export Functions of the Influenza A Virus Nucleoprotein

PLoS pathogens, 2015-07, Vol.11 (7), p.e1005062-e1005062

2015

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PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs

Nucleic acids research, 2015-01, Vol.43 (Database issue), p.D392-D398

2015

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AIG1 affects in vitro and in vivo virulence in clinical isolates of Entamoeba histolytica

PLoS pathogens, 2018-03, Vol.14 (3), p.e1006882-e1006882

2018

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Genome-Wide Analysis of Known and Potential Tetraspanins in Entamoeba histolytica

Genes, 2019-11, Vol.10 (11), p.885

2019

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PreBINDS: An Interactive Web Tool to Create Appropriate Datasets for Predicting Compound-Protein Interactions

Frontiers in molecular biosciences, 2021-12, Vol.8, p.758480-758480

2021

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Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora

BMC genomics, 2016-01, Vol.17 (48), p.62-62, Article 62

2016

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Parallelization of MAFFT for large-scale multiple sequence alignments

Application of the MAFFT sequence alignment program to large data-reexamination of the usefulness of chained guide trees

DeepECA: an end-to-end learning framework for protein contact prediction from a multiple sequence alignment

Application of Homology Modeling by Enhanced Profile-Profile Alignment and Flexible-Fitting Simulation to Cryo-EM Based Structure Determination

Origin and Evolutionary Alteration of the Mitochondrial Import System in Eukaryotic Lineages

Neuronal and non-neuronal functions of the synaptic cell adhesion molecule neurexin in Nematostella vectensis

Neural networks for protein structure and function prediction and dynamic analysis

Revisiting amino acid substitution matrices for identifying distantly related proteins

Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance

Molecular architecture of the active mitochondrial protein gate

Protein–protein interaction prediction methods: from docking-based to AI-based approaches

Tyrosine phosphorylation of the GARU E3 ubiquitin ligase promotes gibberellin signalling by preventing GID1 degradation

Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium

Template‐based quaternary structure prediction of proteins using enhanced profile–profile alignments

Tam41 Is a CDP-Diacylglycerol Synthase Required for Cardiolipin Biosynthesis in Mitochondria

Protein ligand-binding site comparison by a reduced vector representation derived from multidimensional scaling of generalized description of binding sites

Class of cyclic ribosomal peptide synthetic genes in filamentous fungi

Compound-protein interaction prediction with end-to-end learning of neural networks for graphs and sequences

Identification of new abscisic acid receptor agonists using a wheat cell-free based drug screening system

A Novel Antiviral Target Structure Involved in the RNA Binding, Dimerization, and Nuclear Export Functions of the Influenza A Virus Nucleoprotein

PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs

AIG1 affects in vitro and in vivo virulence in clinical isolates of Entamoeba histolytica

Genome-Wide Analysis of Known and Potential Tetraspanins in Entamoeba histolytica

PreBINDS: An Interactive Web Tool to Create Appropriate Datasets for Predicting Compound-Protein Interactions

Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora

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