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Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming

Nature climate change, 2016-06, Vol.6 (6), p.595-600

2016

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Revealing the bacterial butyrate synthesis pathways by analyzing (meta)genomic data

mBio, 2014-04, Vol.5 (2), p.e00889-e00889

2014

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The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level

Nucleic acids research, 2018-07, Vol.46 (W1), p.W282-W288

2018

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Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes

The ISME Journal, 2015-11, Vol.9 (11), p.2490-2502

2015

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Ribosomal Database Project: data and tools for high throughput rRNA analysis

Nucleic acids research, 2014-01, Vol.42 (Database issue), p.D633-D642

2014

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FunGene: the functional gene pipeline and repository

Frontiers in microbiology, 2013, Vol.4, p.291-291

2013

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Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

Applied and Environmental Microbiology, 2007-08, Vol.73 (16), p.5261-5267

2007

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Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution

The ISME Journal, 2015-06, Vol.9 (6), p.1269-1279

2015

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An omics-based framework for assessing the health risk of antimicrobial resistance genes

Nature communications, 2021-08, Vol.12 (1), p.1-11, Article 4765

2021

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Diverse and abundant antibiotic resistance genes in Chinese swine farms

Proceedings of the National Academy of Sciences - PNAS, 2013-02, Vol.110 (9), p.3435-3440

2013

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Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems

Microbiome, 2021-05, Vol.9 (1), p.108-108, Article 108

2021

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Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem

Proceedings of the National Academy of Sciences - PNAS, 2007-02, Vol.104 (8), p.2761-2766

2007

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Cellulosic biofuel contributions to a sustainable energy future: Choices and outcomes

Science (American Association for the Advancement of Science), 2017-06, Vol.356 (6345), p.1349-1349

2017

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Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

Proceedings of the National Academy of Sciences - PNAS, 2014-03, Vol.111 (9), p.E836-E845

2014

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In-feed antibiotic effects on the swine intestinal microbiome

Proceedings of the National Academy of Sciences - PNAS, 2012-01, Vol.109 (5), p.1691-1696

2012

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Associative nitrogen fixation (ANF) in switchgrass (Panicum virgatum) across a nitrogen input gradient

PloS one, 2018-06, Vol.13 (6), p.e0197320-e0197320

2018

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Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine Agriculture

mBio, 2016-04, Vol.7 (2), p.e02214-e02215

2016

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Genomic Insights That Advance the Species Definition for Prokaryotes

Proceedings of the National Academy of Sciences - PNAS, 2005-02, Vol.102 (7), p.2567-2572

2005

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Microbes and Climate Change: a Research Prospectus for the Future

mBio, 2022-06, Vol.13 (3), p.e0080022

2022

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High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant

FEMS microbiology ecology, 2016-03, Vol.92 (3), p.1

2016

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Bioaccumulation of Manure-borne antibiotic resistance genes in carrot and its exposure assessment

Environment international, 2021-12, Vol.157, p.106830-106830, Article 106830

2021

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More replenishment than priming loss of soil organic carbon with additional carbon input

Nature communications, 2018-08, Vol.9 (1), p.3175-9, Article 3175

2018

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Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead

Current opinion in microbiology, 2007-10, Vol.10 (5), p.504-509

2007

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Tackling soil diversity with the assembly of large, complex metagenomes

Proceedings of the National Academy of Sciences - PNAS, 2014-04, Vol.111 (13), p.4904-4909

2014

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Fungal community structure in disease suppressive soils assessed by 28S LSU gene sequencing

PloS one, 2014-04, Vol.9 (4), p.e93893-e93893

2014

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Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming

Revealing the bacterial butyrate synthesis pathways by analyzing (meta)genomic data

The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level

Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes

Ribosomal Database Project: data and tools for high throughput rRNA analysis

FunGene: the functional gene pipeline and repository

Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution

An omics-based framework for assessing the health risk of antimicrobial resistance genes

Diverse and abundant antibiotic resistance genes in Chinese swine farms

Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems

Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem

Cellulosic biofuel contributions to a sustainable energy future: Choices and outcomes

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

In-feed antibiotic effects on the swine intestinal microbiome

Associative nitrogen fixation (ANF) in switchgrass (Panicum virgatum) across a nitrogen input gradient

Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine Agriculture

Genomic Insights That Advance the Species Definition for Prokaryotes

Microbes and Climate Change: a Research Prospectus for the Future

High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant

Bioaccumulation of Manure-borne antibiotic resistance genes in carrot and its exposure assessment

More replenishment than priming loss of soil organic carbon with additional carbon input

Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead

Tackling soil diversity with the assembly of large, complex metagenomes

Fungal community structure in disease suppressive soils assessed by 28S LSU gene sequencing

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